Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0090 ATGAAGATCACAGTCTTACAATACTTAGGAATTTTGTTCCTCAATGTCCTTATCACTTGCCAGGCACTGAGGCATCATAAGTTTGTGGTTAGAGATGCTCCATACACCAAGCTTTGCAGCACAAAGAACATCTTAACCGTAAATGGCCAATTTCCTGGACCAACCCTATATGTTACCAAAGGAGAAACCATCATCGTTGATGTGTATAACCGAGCTAACTATAACATCACCATCCACTGGCATGGAGTGAACCAACCGAGATATCCATGGTCAGATGGACCTGAATATATAACACAATGTCCAATTCGACCAGGTGGAAAGTTCAGTCAAAAGGTTATATTTTCTGAAGAGGAAGGCACTCTTTGGTGGCATGCTCATAGTGACTGGTCTCGGGCCACAGTTCATGGGATGATTGTGGTCAAACCCACTCCTGGAACTACATATCCATTTCCAAAACCACACAAAGAGGTCCCTATTATACTAGGTGAATGGTGGAAGAAAGACATTGTAGAGGTTTACAATGAATTTCGTAGAACTGGAGGAGATGCCAATATTTCTGATGCTTATACTATTAATGGCCAACCTGGTGATCAATATCCATGCTCAAGTAATGAAACCTTCAAGCTTAGGGTTGACTATGGCAAAACCTATCTTCTCCGAATGGTTAATGCAGCAGTGCAGGACATACTCTTCTTTGCAATTTCCAAACATCAAGTGACAATAGTAGGAAGTGATGGAAACTATGTAAAGCCACTGAAGGTAGATTATATCACAATATCACCTGGACAAACAATGGATGTGTTACTAGAAGCAAACCAACCATTAGGTCAATATTACATGGCTTCTAAAGTATATTCCAGTGCAACTGGTGTTGAATTTGATAACACCACAACCACTGCTATTATACAATATAGAGGAAACTACATCCCATCTTCAACTACCCCTTCTTTACCTTCACTACCAGCTTCTGATGATATCATGGCCTCGATCAACCTCATTAGTCAACTTAGAAGCTTGAATGATAACCAACACCAGATTGATGTGCCTTTAAACATAACCACCAACCTTTTCTTCACAACCTCAGTTAACACATTACCATGTTCAAATGATTCAACTTGTGCACTTCCTGGTAATAACCGCCTTTCTGCTAGCATGAACAACATAAGCTTCCAACTGCCTTCAAACAACAACATTTTACAGGCTTACTACAACAACATTAGTGGTGTCTTTGGAGAAAATTTCCCTAATGTGCCACCATTGTTGTTTGATTTCACTGGAAATAACTTGCCTGCATACCTAACTACTCCATCAGTGGCTACTGAGGTTAATGTGCTTGAGTATAACTCAACAGTGGAACTTGTTCTTCAATCGACTAATATCCTGGCTGGTACAGAACATCCTATTCATTTACATGGACACAATTTCTATGTTGTGGGATGGGGATTTGGGAACTTTGATAAGGACAAGGATCCTTTGAACTACAATCTTGTTGATCCTCCTTATCAGAATACTGTAGCCATGCCCAAAAATGGCTGGACAGCCATAAGATTCAGAGCCCAAAACCCAGGTGTATGGTTCGTGCATTGCCATTTAGAGCGTCATGTAAGTTGGGGGATGGCTATGACTTTCATTGTCAAAAATGGTGACAAGACAGAAGAACAGATGTTACCACCACCACCAGACATGCCTCAATGTTAA 1698 0.4064 MKITVLQYLGILFLNVLITCQALRHHKFVVRDAPYTKLCSTKNILTVNGQFPGPTLYVTKGETIIVDVYNRANYNITIHWHGVNQPRYPWSDGPEYITQCPIRPGGKFSQKVIFSEEEGTLWWHAHSDWSRATVHGMIVVKPTPGTTYPFPKPHKEVPIILGEWWKKDIVEVYNEFRRTGGDANISDAYTINGQPGDQYPCSSNETFKLRVDYGKTYLLRMVNAAVQDILFFAISKHQVTIVGSDGNYVKPLKVDYITISPGQTMDVLLEANQPLGQYYMASKVYSSATGVEFDNTTTTAIIQYRGNYIPSSTTPSLPSLPASDDIMASINLISQLRSLNDNQHQIDVPLNITTNLFFTTSVNTLPCSNDSTCALPGNNRLSASMNNISFQLPSNNNILQAYYNNISGVFGENFPNVPPLLFDFTGNNLPAYLTTPSVATEVNVLEYNSTVELVLQSTNILAGTEHPIHLHGHNFYVVGWGFGNFDKDKDPLNYNLVDPPYQNTVAMPKNGWTAIRFRAQNPGVWFVHCHLERHVSWGMAMTFIVKNGDKTEEQMLPPPPDMPQC 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0090 565 Gene3D - 154 342 IPR008972 -
Lal13g0090 565 PANTHER LACCASE 12 565 - -
Lal13g0090 565 Pfam Multicopper oxidase 417 548 IPR011706 GO:0005507|GO:0016491
Lal13g0090 565 SUPERFAMILY Cupredoxins 353 565 IPR008972 -
Lal13g0090 565 TIGRFAM laccase: laccase 23 565 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lal13g0090 565 CDD CuRO_3_LCC_plant 409 548 IPR034289 GO:0005507
Lal13g0090 565 CDD CuRO_2_LCC_plant 157 304 IPR034285 -
Lal13g0090 565 ProSitePatterns Multicopper oxidases signature 2. 528 539 IPR002355 GO:0005507
Lal13g0090 565 SUPERFAMILY Cupredoxins 150 339 IPR008972 -
Lal13g0090 565 CDD CuRO_1_LCC_plant 26 142 IPR034288 GO:0005507
Lal13g0090 565 ProSitePatterns Multicopper oxidases signature 1. 523 543 IPR033138 -
Lal13g0090 565 Gene3D - 24 151 IPR008972 -
Lal13g0090 565 Gene3D - 369 565 IPR008972 -
Lal13g0090 565 SUPERFAMILY Cupredoxins 21 167 IPR008972 -
Lal13g0090 565 Pfam Multicopper oxidase 156 307 IPR001117 -
Lal13g0090 565 PANTHER MULTI-COPPER OXIDASE 12 565 IPR045087 -
Lal13g0090 565 Pfam Multicopper oxidase 31 143 IPR011707 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0090 Lal-Chr13 592227 594675 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0090 K05909 - qsu:112034097 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0090 13 592227 594675 Lal13g0090 13 592227 594675 ECH
Lal1g0890 1 6341820 6348649 Lal13g0090 13 592227 594675 PCT
Lal13g0090 13 592227 594675 Lal1g0890 1 6341820 6348649 PCT