Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0089 ATGGCCTCCTCTTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCTTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCTGTTGTCTCTTTCAGATTAGTTGTTGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAAACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATCAAATTAATGGGCGACAGTTACGTGTTGATTTTGCTGAAAATGATAAGGGGAATGATAAAAATAGAGAACAGGGTCGTGGTGGGCCTGGTCTGACAGCAAATGTTGACTCTCAGAAACAAGTAGTTAGTGCTGCTTTCCATGGGGAAGCTGCTCACCATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGAGGTGCTCAGTTTAGCACCCAGTCAAACCAAAATGCTTTGCAGAGTCAGTCGGCATTGGCACACGACCCTTTAACCCTGCATCTCGCCAAAATGTCCAGGAGTCAATTGATTGATATTCTCTCTGATGTCAAGGCAATGGCTACACAGAACCAGGACCTGGCCCGCCAGCTGTTACTTTCAAGACCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGTTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAATCTTAGGTTGGTTTCAGATCAAACCTCACAGCTTTCAATAAAAGAAGGCCAGCTAGGTCAGCCGACATTACTTCAAACTCTGTCTGGTTTGCTACCTCATGGACAGAACCAGTTGCAGTCTGGTTTGATGCCTTATGTTCAAGATGGCCAAGTCAGCTCCATACCTCATAATCCTTTGAGTCCTAATCAATTGACTGCACATCCAAAGCCTCCAGTGCAACCTCGAATTCAACTCCAACAACATCCAAGCAACCATGTTGTACAGCTAGGAACATTGCCGGCCCCATCTAATTTAATGCTTCCTTCTGTGCGTCCCCAGACATTGGGAAGTTTACCTGTCAGGCCTCCAATTCAGCAAGCAACTTTAGGACATAATAATGCTCAGCTGGTTCGTTTGGATGCAAGCTTTCAGCCTGGCCCCTCCATATCATCAGGTAGTTCTCAGTTAATTATTAGGGGAAGTGATACTTCTGCTAAAGTTCTAGAGGATTTAAGTTCGGCCCAGAGAAGTAGTACATATTCAAAGGCACCTATGGGATTAGAGAAAACAAACATGATTCACGATTCTTCAGAATCTTTTACTCGGCCTTCAAAGCTCTTGAAAATGGACCAAGGCAGCAGCACATATTTTTCTGCAGGGATTGCGGATGTGCCTGTCACTAATGGATCATCCCGTGTAGTTGGAAGTAGTTCATTGCCTGTGCGTCCGGCTCCTATAGCAGAAGTGCATCAACCACCTCAGCTTGTTTTGTCTGGCCAGCCTCAGGTTCCACCTGATGTAGAGTCTGCCCTACTGCAACAAGTATTGAATCTAACACCAGAGCAATTGAGTTCGCTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTTCAACAGGCTCTTCGGCGAGACCAAATGCAGCAACCCTCATAG 1608 0.4571 MASSSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVVDRETGKPKGYGFCEYKDEETALSARRNLQGYQINGRQLRVDFAENDKGNDKNREQGRGGPGLTANVDSQKQVVSAAFHGEAAHHQPIGLHIAITAAAVMTAALGGAQFSTQSNQNALQSQSALAHDPLTLHLAKMSRSQLIDILSDVKAMATQNQDLARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQLSIKEGQLGQPTLLQTLSGLLPHGQNQLQSGLMPYVQDGQVSSIPHNPLSPNQLTAHPKPPVQPRIQLQQHPSNHVVQLGTLPAPSNLMLPSVRPQTLGSLPVRPPIQQATLGHNNAQLVRLDASFQPGPSISSGSSQLIIRGSDTSAKVLEDLSSAQRSSTYSKAPMGLEKTNMIHDSSESFTRPSKLLKMDQGSSTYFSAGIADVPVTNGSSRVVGSSSLPVRPAPIAEVHQPPQLVLSGQPQVPPDVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQQPS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0089 535 Pfam Transcription termination and cleavage factor C-terminal 495 528 IPR026896 GO:0031124
Lal13g0089 535 Gene3D - 157 231 - -
Lal13g0089 535 CDD RRM_CSTF2_CSTF2T 10 84 - -
Lal13g0089 535 Gene3D - 490 531 IPR038192 -
Lal13g0089 535 SUPERFAMILY RNA-binding domain, RBD 5 102 IPR035979 GO:0003676
Lal13g0089 535 Gene3D - 1 112 IPR012677 -
Lal13g0089 535 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 529 - -
Lal13g0089 535 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Lal13g0089 535 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lal13g0089 535 MobiDBLite consensus disorder prediction 507 535 - -
Lal13g0089 535 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 229 IPR025742 -
Lal13g0089 535 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0089 Lal-Chr13 586024 591197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0089 10 83 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.46e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0089 K14407 - gmx:100806489 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0112 12 751223 755312 Lal13g0089 13 586024 591197 LSH