Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0078 ATGGGTTGTGTTCAGGCTAAGCCTTGTGAAGGGTCAGAAGATTACTCATTGGTTCTACAAAGGTTGAAATTTGAAAATGGGTATTTTTGTAATCATGACTTTGTTCCTCATAGAAGATCCACTGGTCAACCTACACACCTTGTTAAGCAGCATCATGTACAAGTACAACCACCCATAAACCATAATAAGAGAGATTCTGATGTTGAGAATGAGAATGAGATGGTTGATGGGTGGCCCAAATGGTTAGTTGATAATGTTCCTACACAAGTCTTATCTGGCTTGGTTCCCAAGACTGCTGAATCTTTCAAAATGATTGATAAGGTAGGACAAGGAACATATAGCAATGTGTATAAAGCTCTAGACCGAGACACTGGAGAAATTGTGGCCCTCAAGAAGGTCAAGTTCAACACATCAAAGCCTGGAAGCGTTAAATTTATGGCAAGAGAAATTATGACACTACAGAGATTGGATCATCCAAATGTAGTAAAACTGAAAGGATTGGCCACTTCAAGAATGAAGTATAGCATTTATTTAGTTTTTGATTTCATGCAAACAGATTTGGCAAGAATTATTGCTCGTCCTGGGGAGAGGCTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTACAACATTGTCATGATAGGGGAATTTTGCATCGAGATATCAAGGGATCAAACCTTTTGATTGATAAGAATGGGATGCTTAAGATTGCAGATTTTGGACTTGCCAATTATTACAATCCAAATCAGAACCAGCCTCTCACAAGCAGGGTTGTGACACTATGGTATAGAGCTCCTGAGTTGTTGTTAGGTGCCACAGATTATGGAGTTGGTATTGATTTATGGAGTGCTGGATGCCTCCTAGCAGAAATGTTTACAGGATTTCCAATCATGCCTGCCAGAACCGAGGTTGAGCAACTTCATAAAGTTTTCAGGCTATGTGGTACACCATCAGAGGAGTATTGGAAAAAATTGAATCTTTCTACAACTTTTAGACCTCCAAAATCTTATAGACCTAGCATTGTAGAAACTTTTAAGGATCTCCCTTCATCTTCTCTGGGTCTTTTGTGTACCCTGCTTGCTTTGGATCCTGCATTCCGTGGCACTGCGTCTAAAGCTCTTAAAAATCAGTTTTTCTTTACCAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTAATCTACAGTGAAGATGATGAGCTCTATCAAGTCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGGTCTCGCACATTTCTTGATGGTCGTAAGAATTTAGCATCTAATAGGCAAATAGAACATTCTGTTTCTTCTAAATAG 1341 0.3982 MGCVQAKPCEGSEDYSLVLQRLKFENGYFCNHDFVPHRRSTGQPTHLVKQHHVQVQPPINHNKRDSDVENENEMVDGWPKWLVDNVPTQVLSGLVPKTAESFKMIDKVGQGTYSNVYKALDRDTGEIVALKKVKFNTSKPGSVKFMAREIMTLQRLDHPNVVKLKGLATSRMKYSIYLVFDFMQTDLARIIARPGERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANYYNPNQNQPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGFPIMPARTEVEQLHKVFRLCGTPSEEYWKKLNLSTTFRPPKSYRPSIVETFKDLPSSSLGLLCTLLALDPAFRGTASKALKNQFFFTSPLACDLSGLPVIYSEDDELYQVKEQIKYMNSKIRRSRTFLDGRKNLASNRQIEHSVSSK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0078 446 Gene3D Transferase(Phosphotransferase) domain 1 185 416 - -
Lal13g0078 446 Pfam Protein kinase domain 103 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0078 446 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Lal13g0078 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Lal13g0078 446 ProSiteProfiles Protein kinase domain profile. 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0078 446 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Lal13g0078 446 SMART serkin_6 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0078 446 SUPERFAMILY Protein kinase-like (PK-like) 97 388 IPR011009 -
Lal13g0078 446 PANTHER CELL DIVISION PROTEIN KINASE 56 445 - -
Lal13g0078 446 PANTHER CYCLIN-DEPENDENT KINASE 56 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0078 Lal-Chr13 510534 514623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0078 97 426 Core Cell Cycle Gene Families AT5G10270 43.228 5.88e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal13g0078 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0078 K08819 - gmx:100776854 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0078 13 510534 514623 Lal13g0078 13 510534 514623 ECH