Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0077 ATGGCCATTGATCACACCTTCGTTGCCATCCTCTCTGCCTTCGCCAGTTTCTTTGTAGTCTCTCTCATCTTGGCCATCATCATCCTTCTCTGCCAACGCCACAATTCCTCCAAAACTCGCACCAACGTCGTCCGAACCCGCCCCGCCCCGAACCCTAATCTATCCCATTCTGTCTCCCTCGTCGATGCCAGCTGGTCCTTCGACCCGAGCCTCAAGATCTCTATGGAAGAGCTCGCACGCGCCACCGACAACTTCTCATCTCACCTCATCGTCGGTGATGGAAGCTTCGGCCTCGTCTACAAGGCCCGCCTGTCCTCCGGCGTCCTCGTCGCCGTCAAAAAACTCTCCCCGGACGCCTTCCAGGGCTTCCGCGAGTTCACGGCGGAGATGGAAACCCTAAGTAAGCTCCGCCATCACAACATCGTCAAGATCCTTGGATATTGGGCTTCCGGCCCCGAGCGGTTACTTGTCTACGAGTTCATCGAAAAAGGAAGCCTGGATCAGTGGCTTCACGAACCCTCTTTCGTTAACGACGACGGTATCAACGACGTAGTTCGTTTACCTTTGTCTTGGGAAACAAGAGTCAAGATAGTCAAAGGTGTGGCCCACGGGCTTTGTTACCTTCATGGGCTTGAGAACCCAGTTATTCATAGAGATATTAAGGCTAGTAATATTTTATTGGATTCTGAGTTTGAGGCCCATATTGCTGATTTTGGGCTTGCGAGGAGAATCAATTCGTTGCATTCACACGTGTCGACGCAGTTTGCCGGGACGATTGGTTACATGCCCCCAGAGTATAGGGATGGGCTTAATGTTGTTAACAAGAAGGTGGATGTGTATAGTTTTGGGGTTTTGATGCTGGAAACAATGTCCGGACAAAGGCCCAATTTGCCGAAGAAGTTGGGCCAGAAAGATTTTGGGATAGTCCAGTGGGCCAGGAAGATGAAGGAGCAAAATGATGAAATGGAGATGATTGATGTGAATATATCAAAGGAGGGATTGAGGGAAGAGAGTGTGAAAGAGTATGTAAGAATTGCATGTATGTGTATAGGTGAGTTACAGAAGGAGAGACCTGAAATGTCTCATGTTGTTCAGTTGTTCGACTCAATGTTGCTTTGA 1119 0.4942 MAIDHTFVAILSAFASFFVVSLILAIIILLCQRHNSSKTRTNVVRTRPAPNPNLSHSVSLVDASWSFDPSLKISMEELARATDNFSSHLIVGDGSFGLVYKARLSSGVLVAVKKLSPDAFQGFREFTAEMETLSKLRHHNIVKILGYWASGPERLLVYEFIEKGSLDQWLHEPSFVNDDGINDVVRLPLSWETRVKIVKGVAHGLCYLHGLENPVIHRDIKASNILLDSEFEAHIADFGLARRINSLHSHVSTQFAGTIGYMPPEYRDGLNVVNKKVDVYSFGVLMLETMSGQRPNLPKKLGQKDFGIVQWARKMKEQNDEMEMIDVNISKEGLREESVKEYVRIACMCIGELQKERPEMSHVVQLFDSMLL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0077 372 ProSiteProfiles Protein kinase domain profile. 85 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0077 372 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Lal13g0077 372 Pfam Protein kinase domain 90 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0077 372 Gene3D Transferase(Phosphotransferase) domain 1 161 371 - -
Lal13g0077 372 CDD STKc_IRAK 91 370 - -
Lal13g0077 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lal13g0077 372 SMART serkin_6 85 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0077 372 SUPERFAMILY Protein kinase-like (PK-like) 60 366 IPR011009 -
Lal13g0077 372 PANTHER OS01G0253100 PROTEIN 4 369 IPR045271 GO:0004714|GO:0006468
Lal13g0077 372 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 4 369 - -
Lal13g0077 372 Gene3D Phosphorylase Kinase; domain 1 52 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0077 Lal-Chr13 507975 509093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0077 69 365 Receptor kinase-like Gene Family AT5G07280 45.638 1.78e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lal13g0077 Pkinase 5.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0077 - - lang:109335579 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0077 13 507975 509093 Lal13g0077 13 507975 509093 ECH