Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0076 AATTCAATTATCATAACCATTTTACAAGTTTCTCCGATCGAGTCCAACACCTATGCCATCTTCAGCGTCACCACAACACTTCGCCTGAAACCTACGCTACCGGCAACATTTACCGGAGAATATCATCGCCGACGCCGACGTAGGACCCCTTCTTTCTATCTTCGAGGTTGCATGCAATACAGCTGTTACTTAGATGAGTTGCCTCAATACATACATATAAATCAGAATGATTTTTTAACACGAAGGCATAAGAAGCAGAAGGAGGAGGATATCGCTATATGTGAATGCAAATATAATGCTAATGATCCTGATAGTGCATGTGGGGATGGGTGCCTGAATGTATTAACCAGCACTGAGTGCACCCCTGGTTATTGCCCCTGTGGTACTGTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTCAAACTGAAGGACGTGGATGGGGTCTGGTGGCTGATGAGAACATTAAGGCAGGACAATTTGTCATTGAATATTGTGGAGAAGTAATATCTTGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTGTCTTAATGCCTCTGAATCTATTGATGCAACTAAAAAGGGAAGCCTCGGTAGATTTATAAATCATTCCTGTCAGCCAAACTGTGAGACCAGAAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAGCTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAAGTTCGCTGTCTCTGTGGCGCATTCAAGTGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGACGACGATGACAGGTACTCTGTTGAGAAAATTCCGGTATATGACTCTGCAGAGGATGAACCGGTGTCAAGGCTAAGATACTTGAACTCAGAGACTTACGTGAACAATTTTGTTAGTAGAACTGAACATTCCATGGATGATATACTCATAGCTGAGAACCTATCAGAGGCTACTGCTTTTAATGTTCAGCCACTTGATTCAGTTCAGATGATGGATTTAGATGTCAAGACGCTTAAAACTGTAGTAGTAAGCGATGATATGAAATTGTACACCCAAGACACTGAACAGGATTTCCCCCAAAAGAATGCAATTGTGTCACGTATCCGAAGTACTACTGCAGGCAGAAACTATCGCATTGGACGTGGGTCCATATCTACCAAAAGATCATCAAAGGCATATAATGGTGGTAGGTTAAAGAATCCCATACAGAAGAAAGTTGATGCAAAATTTGCAGCTGGACTCATAGCATCAAAAGAAGCACAAGAGGAGATTTTAAAATGCGAGGAAATAAAAAATGACGCAACATCTGGTCTTGATTCTTTATACAATGAAATAAGGCCTGCCATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACTAGTGTAGCAGAGAAGTGGATAGAAGTTTGCTGTCTAAAATTGAAAGCAGAGTTTGACCTTTACTCCACAATTGTCAAAAACGTTGCTTGCACTCCTCACAAGGCATCTGGCCAAGCAAAACCTACTGAAGTTGATATTGACAACGAAATTAAGCTTTTGACCGGTTGA 1662 0.4049 NSIIITILQVSPIESNTYAIFSVTTTLRLKPTLPATFTGEYHRRRRRRTPSFYLRGCMQYSCYLDELPQYIHINQNDFLTRRHKKQKEEDIAICECKYNANDPDSACGDGCLNVLTSTECTPGYCPCGTVCKNQKFQKCEYAKTKLFQTEGRGWGLVADENIKAGQFVIEYCGEVISWKEAKRRSQAYETQGLKDAFIICLNASESIDATKKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGAELAYDYNFEWFGGAKVRCLCGAFKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSRLRYLNSETYVNNFVSRTEHSMDDILIAENLSEATAFNVQPLDSVQMMDLDVKTLKTVVVSDDMKLYTQDTEQDFPQKNAIVSRIRSTTAGRNYRIGRGSISTKRSSKAYNGGRLKNPIQKKVDAKFAAGLIASKEAQEEILKCEEIKNDATSGLDSLYNEIRPAIEEHERDSQDSVSTSVAEKWIEVCCLKLKAEFDLYSTIVKNVACTPHKASGQAKPTEVDIDNEIKLLTG 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0076 553 ProSiteProfiles AWS domain profile. 89 140 IPR006560 GO:0005634|GO:0018024
Lal13g0076 553 SMART shorttest3 89 141 IPR006560 GO:0005634|GO:0018024
Lal13g0076 553 Pfam SET domain 153 259 IPR001214 GO:0005515
Lal13g0076 553 PANTHER SET DOMAIN PROTEINS 52 492 - -
Lal13g0076 553 ProSiteProfiles SET domain profile. 142 259 IPR001214 GO:0005515
Lal13g0076 553 ProSiteProfiles Post-SET domain profile. 266 282 IPR003616 -
Lal13g0076 553 SMART set_7 142 265 IPR001214 GO:0005515
Lal13g0076 553 Pfam AWS domain 102 139 IPR006560 GO:0005634|GO:0018024
Lal13g0076 553 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 52 492 - -
Lal13g0076 553 Gene3D SET domain 57 294 IPR046341 -
Lal13g0076 553 SUPERFAMILY SET domain 68 279 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0076 Lal-Chr13 502366 507722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0076 124 281 C2H2 Transcription Factor Family AT2G23740 34.807 1.78e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal13g0076 SET 7.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0076 - - lang:109335575 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0076 13 502366 507722 Lal13g0076 13 502366 507722 ECH