Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0074 CTCGTATTTAACTCTCTCTCCCTCTCTTCATTCATCACCTCTCTCTCTCTCTCTCTCTCTCAGATTAATCAATTCACAATGGCTGAACCTTCCAAGGTCATTCATATTCGAAATGTGGGGCAGGAAATATCTGAAGATGATTTGCTCCAGCTATTTCAGTCTTTTGGAGTCATAACAAAGCTAGTAATGCTGCGAGCAAAAAACCAGGCTCTTATCCAAATGCAAGATGTTGATACTGCAGCTAGTGCTTTACAATTTTATGAAAATATTCAGCCAAACATAAGGGGAAGGAATGTTTATATCCAGTTTTCCTCACATCAGGATCTAGCACCAACTGATCAAAATCAAGGACGAGGAGACGAGCCAAACCGAATTCTCTTAGTTACAATTCATCATGTGCTATATCCTATGACAGCGGATGTGTTGCATCAAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTTACAAGTCAGCTGGCTGTCAGGCTCTCATACAGTATCAATCACGTCAGAGTGCTGTTACTGCAAAAAACGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGATCGTTCCAGGGACTTCACGAACCCAAATCTTCCTACTGAGCAGAAAGGAAGACCTTCACAAGTGGCCAATGCTGATGCCATTGCAGCTGCCTTTGGGGGAAATTTCCCCCCTGGAGTAACTGGGGAAAATGACAGGTGTACAATTCTTGTCTCAAATCTGAATCCCGATAGAATAGACGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGAATTAAACTTCTCTGGAACAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGAGCAATGCTGTTTGGGAAGCGGTTAGAGGTGAACTTCTCTAAGCATGCAACCATACTCCAAGGTGCTGACACTCACGAGTATGGCAATTCGAACCTGAATCGGTTCAACCACAATGCTGCAAAGAATTACCGATACTGCTGCTATCCGACATGGATGATCCATTTGTGCACTCTCCCTCAAGACATCACTGAAGAGGATATTGTGGACTTGGTAGAGGACCATGGAGTCATCCTGAAGTGCAAGGTATTTGAAATGAATGGGAAAAAGCAGGCTCTTGTTCAGTTCGAGACTGAGGAGCAGGCAACTGAAGCTCTTGTGTGCAAGCATGCCACCTCGATTTCGGGCTCAGTAGTCAGGATCTCCTTCTCTCAGCTACATAACATATGA 1338 0.4342 LVFNSLSLSSFITSLSLSLSQINQFTMAEPSKVIHIRNVGQEISEDDLLQLFQSFGVITKLVMLRAKNQALIQMQDVDTAASALQFYENIQPNIRGRNVYIQFSSHQDLAPTDQNQGRGDEPNRILLVTIHHVLYPMTADVLHQVFSPHGSVEKIVTFYKSAGCQALIQYQSRQSAVTAKNALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQVANADAIAAAFGGNFPPGVTGENDRCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLWNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHATILQGADTHEYGNSNLNRFNHNAAKNYRYCCYPTWMIHLCTLPQDITEEDIVDLVEDHGVILKCKVFEMNGKKQALVQFETEEQATEALVCKHATSISGSVVRISFSQLHNI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0074 445 SMART rrm1_1 259 328 IPR000504 GO:0003723
Lal13g0074 445 SMART rrm1_1 33 102 IPR000504 GO:0003723
Lal13g0074 445 SMART rrm1_1 127 196 IPR000504 GO:0003723
Lal13g0074 445 SMART rrm1_1 369 438 IPR000504 GO:0003723
Lal13g0074 445 Gene3D - 255 349 IPR012677 -
Lal13g0074 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 342 - -
Lal13g0074 445 Gene3D - 124 227 IPR012677 -
Lal13g0074 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 332 IPR000504 GO:0003723
Lal13g0074 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Lal13g0074 445 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 27 443 - -
Lal13g0074 445 Gene3D - 21 123 IPR012677 -
Lal13g0074 445 Pfam RRM-like domain 121 200 IPR021790 -
Lal13g0074 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 442 IPR000504 GO:0003723
Lal13g0074 445 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 27 443 - -
Lal13g0074 445 SUPERFAMILY RNA-binding domain, RBD 255 440 IPR035979 GO:0003676
Lal13g0074 445 SUPERFAMILY RNA-binding domain, RBD 27 118 IPR035979 GO:0003676
Lal13g0074 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 435 IPR000504 GO:0003723
Lal13g0074 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 86 IPR000504 GO:0003723
Lal13g0074 445 SUPERFAMILY RNA-binding domain, RBD 122 223 IPR035979 GO:0003676
Lal13g0074 445 Gene3D - 350 444 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0074 Lal-Chr13 493045 499466 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0074 K14948 - gmx:100791570 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0074 13 493045 499466 Lal13g0074 13 493045 499466 ECH
Lal12g0095 12 643263 649568 Lal13g0074 13 493045 499466 LSH
Lal13g0074 13 493045 499466 Lal24g0079 24 508069 514324 LSH
Lal9g0874 9 6553234 6560923 Lal13g0074 13 493045 499466 PCT
Lal13g0074 13 493045 499466 Lal9g0874 9 6553234 6560923 PCT