Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0073 ATGTCTCACAGGAAATTCGAACACCCAAGGCACGGTTCTCTTGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGACCAAACTAAGCCACCTAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACTCATATTGTTAGAGAGGTCGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACTTGTGAGCCTGTTACAATTATCGAGACCCCTCCAATGGTTATTGTTGGGGTTGTTGGATACGTCAAAACTCCCCGTGGGCTTCGAACATTAAACACTGTGTGGGCTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTACAAGAACTGGTCTAAGTCCAAGAAGAAAGCCTTTACAAAGTACTCAAAGCAGTATGAATCTGAAGATGGGAAGAAAAATATTGAGGCACAGCTTGAGAAAATCAAGAAATATGCCACTGTTGTCCGTGTTCTGGCTCACACTCAGATCAGGAAGTTGAAGGGTTTGAAGCAGAAGAAAGCGCATATTATGGAGATTCAGGTTAACGGTGGAACTATTCCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCCATCGATGCTGTGTTCCAGAAGGATGAGATGATTGACCTCATTGGAGTGACCAAAGGTAAGGGTTATGAAGGTGTGGTCACCCGTTGGGGTGTTACCCGTCTTCCCCGCAAGACTCACAGGGGTTTGAGGAAGGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTTACTGTTGCTAGGGCTGGTCAGAATGGATACCACCACAGAACTGAGTTGAACAAGAAGGTTTACAGGCTTGGAAAAGCCGGACAAGAGTCTCATGATGCTGTTACCGATTTCGATAGGACTGAGAAAGACATTACACCAATGGGTGGGTTCCCTCACTATGGTATTGTGAAGGACGATTATCTGATGGTGAAGGGTGGTTGTGTTGGTCCTAAGAAAAGGGTTATCACATTGCGCCAATCCTTGCTTAAGCAAACTTCTCGCCTTGCACTTGAGGAGATCAAACTCAAGTTTATTGACACATCTTCAAAGTTTGGTCATGGTCGTTTCCAGACAACAGAAGAGAAGCAAAAGTTCTTTGGACGCCTCAAAGCATAG 1170 0.4538 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDQTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWSKSKKKAFTKYSKQYESEDGKKNIEAQLEKIKKYATVVRVLAHTQIRKLKGLKQKKAHIMEIQVNGGTIPQKVDFAYSFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYRLGKAGQESHDAVTDFDRTEKDITPMGGFPHYGIVKDDYLMVKGGCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTEEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0073 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Lal13g0073 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Lal13g0073 389 MobiDBLite consensus disorder prediction 1 36 - -
Lal13g0073 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Lal13g0073 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Lal13g0073 389 Gene3D - 83 207 - -
Lal13g0073 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lal13g0073 389 Gene3D Translation factors 44 385 - -
Lal13g0073 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0073 Lal-Chr13 468324 471397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0073 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0073 K02925 - gmx:100819132 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0073 13 468324 471397 Lal13g0073 13 468324 471397 ECH
Lal12g0094 12 633689 642166 Lal13g0073 13 468324 471397 LSH