Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0067 ATGGCAGATCTTGTTAGCTACGGGAATGTCGACCGTGACATCCACCAGGCATTGATTGCTTTGAAAAGGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGCCCATTTAGACTTTCCGATGATGAGTCATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGCCTGAAGCTATCATCTGTCTCTAGAATTATTCCCGGACAAAGAACTGCTGTTTTCCAGCGTTATCTGCATCCCGAGAAGGACTATTTGTCTTTTTCACTTATTTATAACGACGGGAAGCGATCCCTTGACTTGATTTTCAAGGACAAAGTCGAGGCCGGCGTGTGGATTTCTGGTCTCAAAGCACTAATATCTTCTGGTCGAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGTTTATATATTGATGATAGTAGAGATTTAACATCAACTAGGACAAGTGAAAGTTCAGCTAGTGCTTCACGAGGCATCAGTTCTCCTGACGTTTCTGTGAGTCTTCCAAATGCTTCTCCAAAGTCCTTTCAGTCTGAGAATACCTTAAATTTTGAAAGGTCGCATGCACCACCAAACCCATCAAATATGCAAGTTAAAGGTTCAAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCTCCCAGCACATCCAGCCACGGCTCTGCACCAGATGATTATGATGCTCTTGGGGATGTGTACATCTGGGGGGAGGTTATCTGTGAGAGTTTTGTGAAAGTCGGTGCCGATAAAAGTGTCAGTTATGTCAGCCCGAGGGCAGATGTTCTCCTCCCCCGGCCACTGGAGTCCGATGTAGTTTTAGATGTACTTCAAATAGCGTGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATCTTTACATGGGGTGAAGAATCTGGAGGACGTCTTGGCCACGGTGTTGGGAAGAATGTGGTTCAACCTCATTTAGTTGAAGCATTGACTTCTTCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGAGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTACTTGGTCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTGGAGGGGCTTCAAGTTGCTTTAGTCACCTGTGGTCCATGGCACACCGCATTGATAACTACAACCGGGCAGCTCTTTACGTTTGGTGATGGAACATTTGGTGCCCTGGGCCATGGAGACAGGGAGAGTGTTTCATATCCTCGAGAAGTTGAATCCTTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCTAGCTCAAGCATATCCTCAGGTAAATTGTTTACATGGGGCGATGGAGATAAAAATCGCCTTGGGCAAGGAGACAAAGAGGCCCGGCTTGAACCAACTTGTGTGGCTTCACTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTTGTCCTGACTACATCTGGACATGTTTTTACAATGGGGAGCACCGTTTATGGTCAGCTTGGGAATCTTCAGTCCGATGGAAAGCTTCCGTGTTTGGTTGAACACAAGCTTGCTGGGGAGTCAGTTGAAGAAATTGCATGCGGAGCATATCATGTCACTGTCTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCAAATGGGAGATTGGGTCACGGGGATGTTGAAGATCGGAAAACACCAACTTTGGTTGAGGCTTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCGAACTACTCTGCTGCTATATGCCTTCATAAGTGGGTATCCGGTGCTGAACAGTCTCAGTGTTCTACTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTACAATTGTGGACTTGTGCACTGTCATTCTTGCAGTTCAAGGAAAGCATTAAGAGCAGCCTTGGCTCCTAATCCTGGGAAGCTATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCAGAAGCTAGCAACAATAATCGGTGGAATGCTTTGCCTCGTTTGTCGGGTGAAAACAAAGACAGGTTAGATAAGTCTGAGCTAAGATTGTCAAAGTCAGCAGTTCCTTCTAACACGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGGAAGAAGGCTGATACATTCACTCATGTTCGGACCACACAAACACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTCTCTACTACTAATGATCTGAAAAGAACAGTTCCAATATCTATTCCTATATCATCTGGAGTGAGCTCCAGATCTGTGTCCCCTTTCTCTAGAAAATCGAGCCCTCCTCGTTCAGCTACACCTATTCCAACAACATCAGGGCTTTCGTTCTCAAAAAGTATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAACCAGGAAGTTCTGAAGTTACGTTCTCAGGTTGAGATCCTGAAGCAGAGATGTGAACTGCAAGAATTAGAGATTCAAAGGTCAGCAAAAAAGACCCAGGAAGCTATGACATTGGCTGCTGAGGAATCTTCCAAGTCCAGGGCTGCAAAAGAAGTCATTAAGTCACTTGCAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCAGGTGTTTTTGATGCTGAGAACATCAGACCAACTTACCAGCCCAATGGCCTGGAGCCAAACACGGTCCATTATCCGGACTCAAATGGTGAGTGCCATGCCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGTCTCGAATCTTCTATGATGAATAATAGAACTGAGGGGAATTTGCCAGGAAGCTATGGAACTAACCTCTACCAGAAAAACATGGGGCTTGTGACCTCTAATGGGAGAGATGATTACCCTGATGCTAAATTGCTGAATGGGAGTGGTATGATCCAGGCGAGAGACAGTAACATATCAGATGCTACAGTTGATGGTAGGGATTCTGGGAATTTCCAAGAGGATGAGAGCAGTTTAACATCAAGGAATTCTGATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTACGAACCTGGTGTCTATATAACACTCACTGCTCTGCGTGATGGAACCCGTGATCTGAAGCGAGTGCGCTTTAGCCGAAGAAGATTTGGAGAGCACCAAGCAGAGATTTGGTGGTCAGAAAACCGTGACAAGGTATACGAAAGGTACAATGTTCGTATCACAGATAAGTCTTCCAACCAATCGACACAGAATGCTAGTTCACCTGTTTCATAA 3345 0.4454 MADLVSYGNVDRDIHQALIALKRGAQLLKYGRKGKPKFCPFRLSDDESSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLHPEKDYLSFSLIYNDGKRSLDLIFKDKVEAGVWISGLKALISSGRGGRSKIDGWSDGGLYIDDSRDLTSTRTSESSASASRGISSPDVSVSLPNASPKSFQSENTLNFERSHAPPNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICESFVKVGADKSVSYVSPRADVLLPRPLESDVVLDVLQIACGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPHLVEALTSSTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITTTGQLFTFGDGTFGALGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGQGDKEARLEPTCVASLIDYNFHKIACGHSLTVVLTTSGHVFTMGSTVYGQLGNLQSDGKLPCLVEHKLAGESVEEIACGAYHVTVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYAKLNKVAEASNNNRWNALPRLSGENKDRLDKSELRLSKSAVPSNTDLIKQLDSKAAKQGKKADTFTHVRTTQTPSLLQLKDVVFSTTNDLKRTVPISIPISSGVSSRSVSPFSRKSSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRSQVEILKQRCELQELEIQRSAKKTQEAMTLAAEESSKSRAAKEVIKSLAAQLKDLAERLPPGVFDAENIRPTYQPNGLEPNTVHYPDSNGECHARAESISGSSLASMGLESSMMNNRTEGNLPGSYGTNLYQKNMGLVTSNGRDDYPDAKLLNGSGMIQARDSNISDATVDGRDSGNFQEDESSLTSRNSDSNQIEAEWIEQYEPGVYITLTALRDGTRDLKRVRFSRRRFGEHQAEIWWSENRDKVYERYNVRITDKSSNQSTQNASSPVS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Lal13g0067 1114 Gene3D - 13 128 IPR011993 -
Lal13g0067 1114 MobiDBLite consensus disorder prediction 1008 1033 - -
Lal13g0067 1114 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Lal13g0067 1114 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Lal13g0067 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Lal13g0067 1114 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1099 - -
Lal13g0067 1114 Gene3D - 182 461 IPR009091 -
Lal13g0067 1114 CDD FYVE_like_SF 633 686 - -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 519 567 IPR000408 -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 467 516 IPR000408 -
Lal13g0067 1114 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Lal13g0067 1114 Coils Coil 880 900 - -
Lal13g0067 1114 CDD PH_PLC_plant-like 12 124 - -
Lal13g0067 1114 MobiDBLite consensus disorder prediction 788 815 - -
Lal13g0067 1114 SMART fyve_4 622 691 IPR000306 GO:0046872
Lal13g0067 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Lal13g0067 1114 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1099 - -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Lal13g0067 1114 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Lal13g0067 1114 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Lal13g0067 1114 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Lal13g0067 1114 MobiDBLite consensus disorder prediction 147 207 - -
Lal13g0067 1114 Pfam Transcription factor BRX N-terminal domain 875 910 IPR027988 -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Lal13g0067 1114 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Lal13g0067 1114 Gene3D - 462 634 IPR009091 -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Lal13g0067 1114 SUPERFAMILY FYVE/PHD zinc finger 624 702 IPR011011 -
Lal13g0067 1114 Coils Coil 824 865 - -
Lal13g0067 1114 SUPERFAMILY PH domain-like 13 123 - -
Lal13g0067 1114 MobiDBLite consensus disorder prediction 152 207 - -
Lal13g0067 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 697 IPR013083 -
Lal13g0067 1114 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Lal13g0067 1114 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0067 Lal-Chr13 405904 418537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0067 1040 1105 Major Intrinsic Protein MIP AT1G31880 50.000 2.25e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0067 - - gmx:100783270 1851.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0080 12 520981 528691 Lal13g0067 13 405904 418537 LSH
Lal13g0067 13 405904 418537 Lal24g0068 24 416580 423368 LSH
Lal2g0971 2 6535731 6543326 Lal13g0067 13 405904 418537 PCT
Lal13g0067 13 405904 418537 Lal2g0971 2 6535731 6543326 PCT