Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0054 ATGGACATCCTAAACCTTATACCTTATATCCTTCTCTTTTTCATTCCATACTCTTTTTGTTTCACTCCCCTAGATAACTATCTCATTAACTGTGGATCACACGCCAATGCTTCACTCTTTAACCGAGTTTTCATCCTTGATTCCACTTTTTTCTCTGCTGATGATTCCATTTCACTCACTAACCAAAACCCACCTCCATATTCTCCCACTTTGTACCACACAGCCAGAGTTTTCACCAACTCTGCTAGTTACAGGTTCAGCATGAAGAAAAATGGTATCCATTTTCTGCGTTTTCATTTCTTTCCCTTTAAAGCTCAAGGTTTTTATATGAATTCTGCAAAATTTGATGTATTGGTTGATGGTATTTTGGTTCTGAGTGATCTCAAGTTAACTAATGATGTGTTGGTTAAAGAGTTTATTCTGAAGATACAATCAAACTTGTTTGAAATTTTATTTAGACCTGTTGGTAACTCGGGTTTTGGATTTGTAAATGCTTTGGAGGTGTTTACTGCTCCTCCAGATTTTGTATTAGATTATGGAACCAGGTTGGTTGGTCCTAATGGACTAGAGATGTACAAGAACCTTTCAACTCGGATTTTAGAAACTATTCATAGGATTAATGTTGGAGGTTTAAAAATAACTCCTTTTAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTTTCTGGTTTTTAAAAATGCTGCTAAGGCTGCAGTAAGCACTCACACACCAAATTACCAAAATGGAAGAGGCGCCACACCAGAGATCGCGCCGGATAATGTTTACATGACTGCTCAGCAGATGAATAGAGAAAACTCAATTTTAGCTTCAAGGTTCAACATAACCTGGAATTTTTCTGTGGCTCCTGGTGGTGGTGGTGGTGGTGTTCCACACTTGGTTCGGTTGCATTTCTGTGACATTGTTAGTCCTGTTCTTAACGTGCTCTACTTTGATGTGTATATTAATGAGTATATTGCATATAAGGATCTTGATTTATCATCCATTACAGTCCACACACTTGCATCGCCTGTCTATGTGGATTTTGTTGCAGATTCGGATGATTCAGGTGTTATTCAAATAAGTGTTGGTCCTTCTGACCTAAGCAGCGCCATGAGGATGAATGCCATATTGAATGGTGCAGAGATAATGAAGGTGGTGAATGTTAATGATTCTAGTATTGTTCACAGGAAGAAAAAATTAGGCGTGTTGGTGATTTCAGTTATTGGAGGTGTTGTTGGCTTGTTTACAATTATCACTGCTTTTCTACTTGCTATGAGATGCAGGAAGAAGAAGCGAAAACTAAGGACAGTGGAAAGTGCTGGATGGACGCCTTTGCGTGTGTTTGGAGGGAGTTCCCTTAATAGAATGCTGTCTGAACCTGGTTCTCGTGGATATTCAGGCTTGAAGATCCCTTTTTCTGATATACAATCAGCAACAAACAATTTTGATAGGAGCCTGATTATAGGGTCCGGTGGGTTTGGTATGGTTTACAAAGGGGTACTTAAAGACAATGTGAAGGTTGCAGTGAAGAGAGGCATGCCAGGGTCCAGACAAGGACTTCCAGAATTCCATACCGAAATAACAGTTCTATCCAAAATTCGCCATCGCCATCTTGTATCACTAGTTGGATTCTGCGAAGAAAATTCAGAGATGATACTTGTGTATGAGTATGTGGAAAGAGGTCCACTTAAAAGGCACTTATATGGTTCAGCAGCACTACCACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATAGGTGCAGCTAGAGGTCTTCACTATCTTCACACCGGTTTCGTACAAGGAATCATCCACCGCGACATTAAATCAACCAATATATTGATTGATGAAGATCATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGATCAGGGCCATGTATGAATGAAACACATGTGAGTACTGGTGTGAAGGGTAGCTTTGGTTATCTTGATCCTGAGTATTACCGGAGGCAGCAGCTTACTGATAAATCGGATGTTTATTCATTTGGTGTTGTGCTTTTTGAGGTTCTGTGTGGCAGACCTGCTGTTGATCCACAACTAACAAGGAAGCAAGTGAACTTAGCAGAATGGGCAGTTGAATGGCTGAACAAGGGCATGCTGGAGCATATTGTTGATCCTCATCTTGTTGGACAGATCAAAGAAAGTTCATTGAAGAAGTTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAACTATGGGTGATGTCTTATGGAATTTGGAATATGCACTTCAGCTCCAAGAAAGTGGACAACTAAGGGAGACACATACTGATAGCAGTACTAATGAAGCAGTGAATGTGACAAATGGAATTGTTCTTGGAAGCTCTTCTAGCAACAGAACAGAGAGATATTATGATAATAATGGTTGTTCAGAGGTAGGTACTAGCCAAGTGTTTTCCCAACTAATGACCAATGAAGGAAGATAG 2472 0.4025 MDILNLIPYILLFFIPYSFCFTPLDNYLINCGSHANASLFNRVFILDSTFFSADDSISLTNQNPPPYSPTLYHTARVFTNSASYRFSMKKNGIHFLRFHFFPFKAQGFYMNSAKFDVLVDGILVLSDLKLTNDVLVKEFILKIQSNLFEILFRPVGNSGFGFVNALEVFTAPPDFVLDYGTRLVGPNGLEMYKNLSTRILETIHRINVGGLKITPFNDTLWRTWIPDEDFLVFKNAAKAAVSTHTPNYQNGRGATPEIAPDNVYMTAQQMNRENSILASRFNITWNFSVAPGGGGGGVPHLVRLHFCDIVSPVLNVLYFDVYINEYIAYKDLDLSSITVHTLASPVYVDFVADSDDSGVIQISVGPSDLSSAMRMNAILNGAEIMKVVNVNDSSIVHRKKKLGVLVISVIGGVVGLFTIITAFLLAMRCRKKKRKLRTVESAGWTPLRVFGGSSLNRMLSEPGSRGYSGLKIPFSDIQSATNNFDRSLIIGSGGFGMVYKGVLKDNVKVAVKRGMPGSRQGLPEFHTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVERGPLKRHLYGSAALPPLSWKQRLEICIGAARGLHYLHTGFVQGIIHRDIKSTNILIDEDHVAKVADFGLSRSGPCMNETHVSTGVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLTRKQVNLAEWAVEWLNKGMLEHIVDPHLVGQIKESSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYALQLQESGQLRETHTDSSTNEAVNVTNGIVLGSSSSNRTERYYDNNGCSEVGTSQVFSQLMTNEGR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0054 823 CDD STKc_IRAK 490 756 - -
Lal13g0054 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Lal13g0054 823 PANTHER OS07G0166700 PROTEIN 15 768 IPR045272 GO:0004714|GO:0006468
Lal13g0054 823 Pfam Protein tyrosine and serine/threonine kinase 489 749 IPR001245 GO:0004672|GO:0006468
Lal13g0054 823 Gene3D - 199 389 - -
Lal13g0054 823 Gene3D - 26 172 - -
Lal13g0054 823 SMART serkin_6 484 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0054 823 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 768 - -
Lal13g0054 823 ProSiteProfiles Protein kinase domain profile. 484 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0054 823 Gene3D Phosphorylase Kinase; domain 1 457 559 - -
Lal13g0054 823 SUPERFAMILY Protein kinase-like (PK-like) 470 753 IPR011009 -
Lal13g0054 823 Gene3D Transferase(Phosphotransferase) domain 1 560 783 - -
Lal13g0054 823 ProSitePatterns Protein kinases ATP-binding region signature. 490 512 IPR017441 GO:0005524
Lal13g0054 823 Pfam Malectin-like domain 29 387 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0054 Lal-Chr13 349081 351552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0054 1 823 Receptor kinase-like Gene Family AT3G46290 48.005 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lal13g0054 Malectin_like 4.8e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0054 - - gmx:100801169 1263.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0054 13 349081 351552 Lal13g0054 13 349081 351552 ECH
Lal12g0062 12 408944 411409 Lal13g0054 13 349081 351552 LSH
Lal2g0936 2 6297032 6299479 Lal13g0054 13 349081 351552 PCT
Lal13g0054 13 349081 351552 Lal2g0936 2 6297032 6299479 PCT