Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0047 ATGAGGACATACGTGTCTAAAGGAGATTATTGTTTGTTTCACCCTACAACTGCACTGCATTGCACTGTTTCCGCTTTCTCTCCCGATTCTGAGATAATCTTTCCAACTTCGTCTCTAGCTTCTTCTAAATTTTGCTTGTTAAGAGAGAGTGTCATGGAAACAGGGCACAACAATGATTCTTTAGATACTGTAATTGGACAAGCATTTGGAAAAGAATCATTTCTTTCATTCCCTAGGGCTGATGACAACCCTATACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGTCTGCCTTTCTTCTCTCCTGTGAAGATTCGGTTGCAGAAGTGCGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATATACGCGTGCATCATCGGTTGAAAAAGCATGACAAGGACTCCAAAATAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTTTCTGTAGAAGAGGCAATGGAACTTGTGTCATTCAGGAATGTGATGCTGGAGGAAATTCCAGGGTCTTCGGTTTTAATTGCTCTGACAACTCTTATTAAAAATCATATATTTTCTCCCCTACCACAGTATTATCTGAGGGCTGGTTCTGCTCTTCTGGATATTATTGAATCTAGGCCTTCCAGTTTTCCTATATCTTCCAAAGAGTTGTTTAGTATTCTTGACGATTCCAGCGAGACAACGTTTTTATGTGGGACAGCAATGTCAATGCAAAGATATGTTTTTGATGGAGAAGCAGGAAAGATTGGTCTTGAGCCAAAAAACCTAGTTGCTTGTACAAGTTTCTTGCTTGAGCAGAAATTGGTGAAGGCATGGCTTGCTGACAAGGACGCTGAAGCATTGAGGTGCCAGAAGCTGCTGATGGAAGAGGAAGATGCTGCTCAGAGAAGGCAAGCTCGGATTTTGGAGAAGAAACACAAGAAAAAGGTTAGACAAAAAGAACAGAAGGCGAGGGGAAGATTTGTAGCTGATACAGAAATTAAACAGAACAATAGAAGCACAGTAGAGGCTGTATCACCAGAAGAAGCATCTATGGATGCACATGACTTTGAAGCACATAATCCAGATACAATTGTGAGTCATGCTCCTTCACCTAATGTAACTATTCACTGCCCAGAGACTACTGAAGTTGTAGATGGGGGTCCACAGTCAAGGAGTGATTGTGTTACCTATCCAAATATTGAGCAACAGAGGTCACAAGGACATAACCGTCAGCGCACGATAGTTGCCAGACAGCATGGGCTGCCAAAATCTCAAAGGGATTTATCCAATGGTTTGCATGCAAGCGAGAATTCTCATACTCCAAAGCTCGAAGTCATTCAGAAATCTAGTACCCTCCATGAACAAAAGGAATCTCGTATTTTTACAAGTAGTAAAGTATGGAGTCGAAAGCCTAAACCTGAAATTGGTAGAGTGATGTCAGATGCCAGGCTGCAGAAAGAACCAGAGCAAGGTAAGAATCATGAAGTTTTGATAGGATCCATATCTATTCCTCTTGGGAATTGCAGCCAATCAGATGGTAATCTCGAGGCATCTCATGCGGACTGCATGGTAGAGAATCTTTCCAAGCAGAATAGTGCTCAGGAGATGCCAATGAAATCTGATTCCTCCCAGAGTGGCAACCCAGTTAAGCTTTGGAGGCCAGTTAACCAGCATGGAACCGAAGATTCAGCGGCACTTCAAAGTGGTGGGACTGAAGCTGATTCAGTTTATGGAATAGATGATCAAACTTTGTCAGGTCAAAGTAGTTTAAAGTTGTGTAATATAGATGGTAGTGACATTGGTTCTAGGAACAACCTCTCCTATCTCGGGGCTAAAGTAGATCCAGAAAACTTCCATTTATCCAGCCATGCTGCAAAAGCCTTTCTTGCTCAAAGATGGAAAGAGGCTATCTCATCAAACCATGTGAAATTGTGCAAAATTGACAGATGTAGCAGTCTTTCAAGGGCCGAGAACCTATTGCCTGCATTGGCCATAGTTACTAAATCCAAACCCAGAATGAAGCCTGAAAAGGAAACCAAGATGAAATTACAGAGGTTCAAGTTTTTTATAATAGACAGCAGAGGTTCAAGTTTTTGCAATGGTTTCTGTCAGGAAAATGAAGGTGGGTTGGACCAACAGGCTATGACCTTAGATGAGCACAAAGAACAATAA 2187 0.417 MRTYVSKGDYCLFHPTTALHCTVSAFSPDSEIIFPTSSLASSKFCLLRESVMETGHNNDSLDTVIGQAFGKESFLSFPRADDNPIQWIQLLHALDQQELPGLPFFSPVKIRLQKCDKCSREFCSPINYRRHIRVHHRLKKHDKDSKINRDLLGAYWDKLSVEEAMELVSFRNVMLEEIPGSSVLIALTTLIKNHIFSPLPQYYLRAGSALLDIIESRPSSFPISSKELFSILDDSSETTFLCGTAMSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEDAAQRRQARILEKKHKKKVRQKEQKARGRFVADTEIKQNNRSTVEAVSPEEASMDAHDFEAHNPDTIVSHAPSPNVTIHCPETTEVVDGGPQSRSDCVTYPNIEQQRSQGHNRQRTIVARQHGLPKSQRDLSNGLHASENSHTPKLEVIQKSSTLHEQKESRIFTSSKVWSRKPKPEIGRVMSDARLQKEPEQGKNHEVLIGSISIPLGNCSQSDGNLEASHADCMVENLSKQNSAQEMPMKSDSSQSGNPVKLWRPVNQHGTEDSAALQSGGTEADSVYGIDDQTLSGQSSLKLCNIDGSDIGSRNNLSYLGAKVDPENFHLSSHAAKAFLAQRWKEAISSNHVKLCKIDRCSSLSRAENLLPALAIVTKSKPRMKPEKETKMKLQRFKFFIIDSRGSSFCNGFCQENEGGLDQQAMTLDEHKEQ 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0047 728 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Lal13g0047 728 SMART c2h2final6 113 135 IPR013087 -
Lal13g0047 728 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
Lal13g0047 728 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 50 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0047 Lal-Chr13 311230 318980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0047 58 687 C2H2 Transcription Factor Family AT4G25610 40.566 1.56e-131 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0047 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0047 - - gmx:100799153 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0047 13 311230 318980 Lal13g0047 13 311230 318980 ECH
Lal12g0055 12 371205 378563 Lal13g0047 13 311230 318980 LSH
Lal2g0929 2 6245401 6252411 Lal13g0047 13 311230 318980 PCT
Lal9g0816 9 5901138 5908366 Lal13g0047 13 311230 318980 PCT
Lal13g0047 13 311230 318980 Lal2g0929 2 6245401 6252411 PCT
Lal13g0047 13 311230 318980 Lal9g0816 9 5901138 5908366 PCT