Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0045 ATGGCTCCTAAACAGCCAAGTACGGGTATTTTTGTTGGAATAAACAAGGGTCATGTTGTTACCAAAAGGGAATTGCCTCCACGCCCTTCAGATCGCAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTCAAGAACCTTATTCGTGAGGTTGCTGGTTTTGCGCCTTATGAAAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAGGATAAGAGAGCTCTGAAAGTGGCTAAGAGAAAGCTTGGAACCCACAAGCGTGCAAAGAGGAAGCGTGAGGAGATGTCCAATGTTCTCCGCAAGATCAGAGCTGGTGGAGGAGCCGGTGACAAGAAGAAGTAA 336 0.4732 MAPKQPSTGIFVGINKGHVVTKRELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKIRAGGGAGDKKK 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0045 111 MobiDBLite consensus disorder prediction 87 111 - -
Lal13g0045 111 Gene3D 60S ribosomal protein L36 1 104 IPR038097 -
Lal13g0045 111 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lal13g0045 111 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lal13g0045 111 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Lal13g0045 111 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lal13g0045 111 MobiDBLite consensus disorder prediction 79 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0045 Lal-Chr13 304976 307216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0045 7 111 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 83.019 1.16e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0045 K02920 - gmx:100526979 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0054 12 368495 370361 Lal13g0045 13 304976 307216 ECH
Lal13g0045 13 304976 307216 Lal13g0045 13 304976 307216 ECH
Lal12g0054 12 368495 370361 Lal13g0045 13 304976 307216 LSH