Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0044 ATGACAGAACCTGAGGAAGAAAATTCATACTTTGCTTCCAAGTCAAAGGAAGGAGGGTACCCTATGGATTTTGATCTGGAAATGGAAAATTCATGGCCTTTACAAAACATGTCCAACCCCATTGTCACGTCACCTTTTATGTTCTCCACTTCCTCTCCTCTATGGGTTTTTTCTGATATGGAAGATGATAGCCCTTCACCCTTCTCTCATTGCTACAAGATCTCTTGTGATTCAAATTCAATTGCTGAAAAGCCAGAGGAGAATGATGACAGCAACAAACTTTTGCCACCCCTTTTGGCTTTGTCACCATTAGAAAATGTGGACTGGTATTATGTAATCAAGGAAAAGATGACACAAGCACTTCGCTACTTCAAACAGTCGACTGAACAGAATGTTCTGGTTCAGGTTTGGGCACCTGTGAGGAATGGCAATTGTTATGTGCTTAAAACTTCTGGTCAGCCCTTTGTTCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACGATCTCCTTGATGTACATGTTTTCCGTGGATGGGGAGAATGATGGAAACCAGGGACTTCCTGGTCGAGTTTTTCAGAAGAAATTACCAGAATGGTCTCCTGATGTTCAGTATTATTCTAGTAAAGAATATCCACGCCGTGATCATGCTCGACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCATTGCATTCATGTGTTGGTGTACTTGAGTTGATAATGACTTCACAAAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAATCCCTAGAGGCAGTAAATTTGAGGAGTTCGGAAATTCTGGACCATCCATACATTCAGATTTGTAATGAAGGCCGACAGAATGCATTTGCAGAGATCTTGGAGATATTGACAGCGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGGTTCCATGTAAGCATCGTACTGTTTTGGCCAATGGTGGTGGTCTAAAGAAAGTTTGTTCTAGTTTTGATGGTAGTTGCATGGGCCAAGTTTGCATGTCTACAACTGATGTTGCATCCTACATCATAGATCCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTTCTGGGAGGGCATTTTTATCCCACAACATGTGCTTCTGCAGTGACATTACCCGATTCTGCAAAACTGATTACCCCTTAGTTCATTACGCTCTCATGTTTGGGTTAACAAGTTGCTTTGCAATTTGTTTACGAAGCTCTCATAGTGAAGATGATGATTATGTGTTAGAGTTTTTTATGCCTCCTAAGATCACTGACTTTCATGAACAAAAGACACTGTTGGGGTCCATATTGGGAACAATGAAACAACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTGGAGGAGAATAGTTCGATTGAAATTATAGAAGCAACAAATGAAGGAGTTCATTTCAAGCTTGAGTCAATCCCAATTGATCGATCCACTAAATCACCTCTTAGACCTTATTCCTCCCCAAATATAGTGGAGGAAATTCCAGAAGATCCGTCAGAACAGCAAATAATGATGTACTGTAATGACATAAATTGCGGAGAGGATTTTGGTGATAATGCACGGGGAAGCATTGATCACATGTCCTTGTTAGAGACTAAAACCGTAAAGAAACCTTCAGAGAGGAAACGTGGAAAAGCTGAGAAATCAATTAGTCTTGAAGTTCTGCAACGATATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCATCCCGAAAGATCAACAAGGTCAACCGTACCCTGTCCAAGCTCAAGCATGTTATTGAATCTGTCCACAACGCTGAAGGAGCGTTCGACTTGAATTCTCTCAGCACAGGTCCACTTCCAAATGCTGTTGGTTCCTTTCCTGAGACTTTTACTCCAAACAAGTTCACCGAGCAAGCCATATTATGCACCAGGCCATCAGAATCACAAATGAAACAAAATGAATTTGATGCTCTTAAAATATCAGAAACAAACAGACAGACTGTGATAGAAGATCAATTGCTAGGAAGGATACAGAGTCTTGAGAAAGTGATTAATGATAAAGGTGACCCAAAAAGGACTGTAACTAAGAGTAGTTCAAGTGAAGATAGCACAAATCCTACTTCACATGGTTCATGTCATTTTAGTCCCCCAAATGAAAGTCCTCCTGTTAAAGATATATTATTTGCATCAAGCAATGAGCAAGGCATGGCGCTAAGGGAATTGCCAGAGTTGGCATTCCAGCCAAGTAATACACTGAACTTTTCAAGTGATTACCCTATTCCCAACATTGCGCCAGCCGCCGAACTTCAACAACAACCATTTCGAGAAATGCTAATAGAGGATGTTGGTAGTTCCGAAAACTTGAGAGATTTATGTCAGGATCTAGTACCAGAAGCGTGTGGGACTAATCTGCCATGTTCTGATTTGGCTCCAAAGCAAAGCTTGCATACTCTTAATAACGCAGTAACACCTTCGGCAGAAAGGAAAGAAATCAAGAATGTGACAATTAAGGCGACATATAAGCAATATATCATAAGGTTCCGGGTGTCTTTGAACTGTAGCATTATGGAATTAAGAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACGTTTGATATCAAGTACCTGGATGATGATAATGAATGGGTTTTGATAGCCTGTGATGCAGACATGCAGGAGTGCATGGATGTTTCATCATCCGGAAGCAACATAGTCAGGGTTTTGGTGCATGATTTAATATCCAATATTGGAAGTTCCCATGAAAGCAGAGGGGAAGTAAGAAGTGATTGTATATAG 2901 0.4105 MTEPEEENSYFASKSKEGGYPMDFDLEMENSWPLQNMSNPIVTSPFMFSTSSPLWVFSDMEDDSPSPFSHCYKISCDSNSIAEKPEENDDSNKLLPPLLALSPLENVDWYYVIKEKMTQALRYFKQSTEQNVLVQVWAPVRNGNCYVLKTSGQPFVLDPHSNGLNQYRTISLMYMFSVDGENDGNQGLPGRVFQKKLPEWSPDVQYYSSKEYPRRDHARHYNVRGTLALPVFEPSLHSCVGVLELIMTSQKINYAPEVDKICKSLEAVNLRSSEILDHPYIQICNEGRQNAFAEILEILTAVCETHNLPLAQTWVPCKHRTVLANGGGLKKVCSSFDGSCMGQVCMSTTDVASYIIDPHLWGFREACVEHHLQQGQGVSGRAFLSHNMCFCSDITRFCKTDYPLVHYALMFGLTSCFAICLRSSHSEDDDYVLEFFMPPKITDFHEQKTLLGSILGTMKQHFQSLKIAAGVELEENSSIEIIEATNEGVHFKLESIPIDRSTKSPLRPYSSPNIVEEIPEDPSEQQIMMYCNDINCGEDFGDNARGSIDHMSLLETKTVKKPSERKRGKAEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRTLSKLKHVIESVHNAEGAFDLNSLSTGPLPNAVGSFPETFTPNKFTEQAILCTRPSESQMKQNEFDALKISETNRQTVIEDQLLGRIQSLEKVINDKGDPKRTVTKSSSSEDSTNPTSHGSCHFSPPNESPPVKDILFASSNEQGMALRELPELAFQPSNTLNFSSDYPIPNIAPAAELQQQPFREMLIEDVGSSENLRDLCQDLVPEACGTNLPCSDLAPKQSLHTLNNAVTPSAERKEIKNVTIKATYKQYIIRFRVSLNCSIMELREEVAKRLKLEVGTFDIKYLDDDNEWVLIACDADMQECMDVSSSGSNIVRVLVHDLISNIGSSHESRGEVRSDCI 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0044 966 PANTHER PROTEIN NLP8 5 960 IPR045012 GO:0003700
Lal13g0044 966 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Lal13g0044 966 ProSiteProfiles PB1 domain profile. 866 947 IPR000270 GO:0005515
Lal13g0044 966 MobiDBLite consensus disorder prediction 730 748 - -
Lal13g0044 966 Gene3D - 865 946 - -
Lal13g0044 966 SUPERFAMILY CAD & PB1 domains 866 950 - -
Lal13g0044 966 SMART PB1_new 866 947 IPR000270 GO:0005515
Lal13g0044 966 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 960 - -
Lal13g0044 966 MobiDBLite consensus disorder prediction 717 757 - -
Lal13g0044 966 CDD PB1_NLP 867 946 IPR034891 -
Lal13g0044 966 Pfam RWP-RK domain 573 621 IPR003035 -
Lal13g0044 966 Pfam PB1 domain 867 946 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0044 Lal-Chr13 299979 304308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0044 804 960 NLP Transcription Factor Family AT1G64530 41.509 2.14e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal13g0044 PB1 3.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0044 - - gmx:100786118 1410.59