Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0035 ATGGGTAAAGCAGCCTGTTGTGAGAAACATGGTGTGAAGAGAGGAGCTTGGACCCCTCAAGAAGACAAAGCCTTAGTTGACTACATCAACAACCATGGTCATGGCAGTTGGCGTACACTACCTAACCGTGCAGGTCTTGTACGTTGTGGAAAAAGTTGTAGGCTGCGGTGGATAAATTATCTTCGACCCGACATTAAGCGTGGTCCATTTACTAATGAAGAAGAAAGTACTATCATTCAATTTCATGCCATGCTTGGCAACAGGTACTGCATTCCTCCTCCATTTGTTGATTTTACTCATCAGCTGCAAAACAAATGGGCTGCTATTGCATCTCAGTTACCAGGAAGAACTGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCACCTCTCTAGGTCAGATCATTCACGAAGTGCTCCTGATCCAAAGATTATAAAGTCTGAGTCTCCTTCTACACGTCACATGGTACAATGGGAAAGTGCCAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCTCCATTGCTTAATTCTTGGTCAACAAGTAATAAAACATACACCGATTGCTATCTTCAACTTTGGCATTCTGAGGTTGGAGACTCATTTCGCATGATTAAGGGAAAGGAAGAAGGAGTAGTAATGTGTCAAGGACATGTCTCACAAGAAGCATCATCATCAATATTGGAGTCATGTTCAGATGTACAGGTGAAAAACACTAGTACTTTTGCTAAAATGACTCAACAACAGGAAGGTAGTACCTACAAACCAAACCTTGAAGATGCTGACACAGGTGGTGGGATAGAGTCAGGAAACTATGAATTTTTCGATGCTTCTGAATCTGCATTTAAGAACTTGCTAGAGGTGCCTGATGGTGATATAGGATTCTGGGACACACTTGCAGTTTCCTAG 918 0.4227 MGKAACCEKHGVKRGAWTPQEDKALVDYINNHGHGSWRTLPNRAGLVRCGKSCRLRWINYLRPDIKRGPFTNEEESTIIQFHAMLGNRYCIPPPFVDFTHQLQNKWAAIASQLPGRTDNEIKNYWNTHLKKHLSRSDHSRSAPDPKIIKSESPSTRHMVQWESARVEAEARLSMESPLLNSWSTSNKTYTDCYLQLWHSEVGDSFRMIKGKEEGVVMCQGHVSQEASSSILESCSDVQVKNTSTFAKMTQQQEGSTYKPNLEDADTGGGIESGNYEFFDASESAFKNLLEVPDGDIGFWDTLAVS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0035 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 98 300 - -
Lal13g0035 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Lal13g0035 305 SUPERFAMILY Homeodomain-like 11 125 IPR009057 -
Lal13g0035 305 Gene3D - 14 66 - -
Lal13g0035 305 CDD SANT 16 61 IPR001005 -
Lal13g0035 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g0035 305 MobiDBLite consensus disorder prediction 134 154 - -
Lal13g0035 305 Gene3D - 68 157 - -
Lal13g0035 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal13g0035 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g0035 305 Pfam Myb-like DNA-binding domain 67 129 IPR001005 -
Lal13g0035 305 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 98 300 - -
Lal13g0035 305 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 89 - -
Lal13g0035 305 ProSiteProfiles Myb-like domain profile. 62 129 IPR001005 -
Lal13g0035 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 133 IPR017930 -
Lal13g0035 305 CDD SANT 69 129 IPR001005 -
Lal13g0035 305 SMART sant 66 131 IPR001005 -
Lal13g0035 305 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0035 Lal-Chr13 244955 246101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0035 1 298 MYB Transcription Factor Family AT3G61250 47.284 8.53e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0035 Myb_DNA-binding 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0035 K09422 - gmx:100807142 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0047 12 327927 329620 Lal13g0035 13 244955 246101 ECH
Lal13g0035 13 244955 246101 Lal13g0035 13 244955 246101 ECH
Lal12g0047 12 327927 329620 Lal13g0035 13 244955 246101 LSH