Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0034 ATGGGGTTCCAGCCACTAGAAAAGGGAAAACCCAAACACAGGAAGGGATTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACTACATCCTTAAGCAAGGTCATGGTTGTTGGAGCTCTGTCCCTATTAAGGCAGGGTTGCAAAGGAATGGAAAGAGCTGTAGATTAAGGTGGATTAACTACTTAAGGCCAGGATTAAAGAAAGGGATGTTCACCAAACAGGAGGAGGAGACTATCCTCACCCTTCACAACATGTTGGGTAACAAGTAA 270 0.4407 MGFQPLEKGKPKHRKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKKGMFTKQEEETILTLHNMLGNK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0034 89 CDD SANT 18 62 IPR001005 -
Lal13g0034 89 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lal13g0034 89 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g0034 89 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lal13g0034 89 PANTHER MYB TRANSCRIPTION FACTOR 1 89 - -
Lal13g0034 89 Gene3D - 15 67 - -
Lal13g0034 89 SMART sant 14 64 IPR001005 -
Lal13g0034 89 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lal13g0034 89 SUPERFAMILY Homeodomain-like 17 89 IPR009057 -
Lal13g0034 89 PANTHER MYB DOMAIN PROTEIN 55 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0034 Lal-Chr13 239748 243280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0034 8 89 MYB Transcription Factor Family AT3G48920 75.610 1.04e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal13g0034 Myb_DNA-binding 6.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0034 K09422 - gmx:778167 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0046 12 322712 325575 Lal13g0034 13 239748 243280 LSH
Lal13g0034 13 239748 243280 Lal24g0039 24 274463 278235 LSH