Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0030 ATGGAGGGTCATAGTGGTTTGATTGGGAGGATGAGGGATGATGACTATGAAAGTCGCTCGGGGAGCGATAATTTTGATGGCGTGTCTGGTGATGATCAGGATGCTGGTGACGATCAGCCAAAGAGGAAGAGATATCATAGACACACTCCTAACCAGATTCAAGATCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCCGATGAGAAGCAGAGGCTGGATCTTAGTAAGAGACTTGGCCTGGAAAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGAAGAACTCAAATGAAGACCCAATTGGAACGCCATGAGAACATAATGCTTAGACAGGAAAATGAGAAGCTTAGAGCTGAGAACAGTATGATAAAAGATGCCATGTCAAACCCAGTATGTAACAGTTGTGGCGGTCCAGCCCTTCCTGGACAAATTTCATTCGAGGAGCACCAGATTAGAATTGAAAATGCTCGACTAAAGGATGAATTGTCTCGTATAGTTGCCTTAACAAACAAGTTCCTCGGCAAGCCGATCTCATCACTGAGCAGTCCCATGGCTCTTCTACCCTCAAATTCTGGTCTAGAACTTGGAATCGGAATGAATAGGATTGGCTGTTCAAGCAATGTTGGCACTCCCTTACCAATGGGACTTGATTTGGGAGACGGGGTCTTGAGCACTGCACCTGCAATGCCTGGGGTTAGATCACCAATGGGATTATTGGGAAATGATGCACAATTAGAGAGATCTATGTTTATAGAACTTGCATTGGCCGCAATGGCAGAATTGATTAAGATGGCTCAGCCAGATAGCCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGCTGAACCACGAGGAGTATGCAAGGTTGTTTTCTCCAAAACCCGCAGGTTATGCAACTGAAGCTACAAAAGACACCGGGATAGTAATCATTAACAGTTTAGCCCTTGTCGAAACATTGATGGACGTGAATCGGTGGGCAGAGATGTTTCCATCTATGATTGCTAGAGCTGTACCCCTTGATGTTATAACTAATGGCATGGGTGGAACCAGAAATGGCGCTTTACTGTTGATGCATTCTGAGGTTCAATTGCTTTCACCACTAGTCCCCGTTCGTCAAGTGCGATTTCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATCGGCCAAGATGCTGCCAATGCGCCTTTCATGACTTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAGGATATGCCCAATGGCTACTCCAAGACTACAAACTTCAATGTTGGGGTTACTTGGGTTGAGCATTGGCAGTATGACGAGAGCGTTGTGCACCAACTCTATCGCCCATTGCTTAATTCTGGCATTGGTTTTGGTGCTCATAGATGGATCGCTACGCTCCAAAGACAGTGTGAGTGCTTGGCAATCCTCATGTCCTCTTCCATCGCAAGTGATGATCACACAGCTTTGAGCCAGGCTGGTAAGAGAAGCATGTTGAAACTAGCACAACGCATGACCAGTAACTTCTATTCCGGGGTTTGTGCTTCATCGGCTCGCAAGTGGGAAAGCCTTTCTGTGGAGACTTTGGGTGATGACATGAGAGTGATGACAAGGAAGAATGTGGATGACCCAGGGGAGCCTCCTGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCACGACAAAGGTTGTTTGACTTTCTGCGCAACGAAGGGCTGAGGAGTGAGTGGGATATTTTGTCGAATGGGGGACCGATGCAGGAGATGGTTCACATTGCTAAAGGACAAGGACATGGAAATTGTGTTTCTCTCCTTCGTGCTGGTTCTGTTAATGCCAATGATGGCAGCATGCTGATTCTGCAAGAAACATGGACGGATTCTTCGTGTTCAGTGGTAGTGTATGCACCGGTGGACGTGCAATCCTTGAATGTGGTGATGAGTGGTGGAGATTCAGAATATGTTGCACTCTTGCCTTCAGGATTTGCCATCGTTCCGGATGGTCAATCATCCCCGGGCTATGGTGTTGTGCCAAACAGTAGTAACGGGACTATACCAAAGGGTGGCGGTGGAGATGATGGAGGTGGAAGCTTGCTGACGGTTGGGTTCCAAATTCTGGTGAATAACCTCCCAACGGCAAAGCTGACGATGGAGTCTGTTGATACTGTGAAGAACCTCATCTCATGCACCATTCAGAAGATCAAAGGTTCCCTCGGAGTTGCATGA 2244 0.4706 MEGHSGLIGRMRDDDYESRSGSDNFDGVSGDDQDAGDDQPKRKRYHRHTPNQIQDLESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRAENSMIKDAMSNPVCNSCGGPALPGQISFEEHQIRIENARLKDELSRIVALTNKFLGKPISSLSSPMALLPSNSGLELGIGMNRIGCSSNVGTPLPMGLDLGDGVLSTAPAMPGVRSPMGLLGNDAQLERSMFIELALAAMAELIKMAQPDSPLWIKSLDGEKEVLNHEEYARLFSPKPAGYATEATKDTGIVIINSLALVETLMDVNRWAEMFPSMIARAVPLDVITNGMGGTRNGALLLMHSEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSVEIGQDAANAPFMTCRRLPSGCVVQDMPNGYSKTTNFNVGVTWVEHWQYDESVVHQLYRPLLNSGIGFGAHRWIATLQRQCECLAILMSSSIASDDHTALSQAGKRSMLKLAQRMTSNFYSGVCASSARKWESLSVETLGDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRNEGLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRAGSVNANDGSMLILQETWTDSSCSVVVYAPVDVQSLNVVMSGGDSEYVALLPSGFAIVPDGQSSPGYGVVPNSSNGTIPKGGGGDDGGGSLLTVGFQILVNNLPTAKLTMESVDTVKNLISCTIQKIKGSLGVA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0030 747 Coils Coil 93 128 - -
Lal13g0030 747 MobiDBLite consensus disorder prediction 1 52 - -
Lal13g0030 747 SUPERFAMILY Bet v1-like 244 477 - -
Lal13g0030 747 CDD START_ArGLABRA2_like 246 476 - -
Lal13g0030 747 SMART HOX_1 40 103 IPR001356 GO:0003677
Lal13g0030 747 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Lal13g0030 747 SUPERFAMILY Homeodomain-like 26 99 IPR009057 -
Lal13g0030 747 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g0030 747 Gene3D - 29 115 - -
Lal13g0030 747 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 745 - -
Lal13g0030 747 SMART START_1 251 477 IPR002913 GO:0008289
Lal13g0030 747 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Lal13g0030 747 SUPERFAMILY Bet v1-like 505 741 - -
Lal13g0030 747 ProSiteProfiles START domain profile. 242 480 IPR002913 GO:0008289
Lal13g0030 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 745 IPR042160 -
Lal13g0030 747 Pfam Homeodomain 42 97 IPR001356 GO:0003677
Lal13g0030 747 CDD homeodomain 41 99 IPR001356 GO:0003677
Lal13g0030 747 Pfam START domain 251 477 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0030 Lal-Chr13 203175 209237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0030 12 744 Homeobox Transcription Factor Family AT3G61150 60.565 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal13g0030 START 2.4e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0030 K09338 - gmx:100794400 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0030 13 203175 209237 Lal13g0030 13 203175 209237 ECH
Lal13g0030 13 203175 209237 Lal24g0037 24 248883 255462 LSH