Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1579 ATGCTTCTGGATCTGTCTAAGAAGATGGCAGATACTGAGGATATCCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCAGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTAGGTCGTCCTCGTCACACTGGTGTTATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGTGATGAGGCACAGTCTAAACGTGGTATTCTCACTCTCAAGTACCCCATCGAGCATGGAATTGTAAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTACAACGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTCTTAACCGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAAATAATGTTCGAGACTTTTAATACCCCTGCTATGTATGTTGCCATTCAAGCTGTTCTTTCACTTTATGCCAGTGGTCGTACAACTGGAATTGTTTTGGATTCTGGTGATGGTGTCAGTCACACAGTTCCTATCTACGAGGGTTATGCCCTCCCACATGCCATCCTCCGTCTTGATTTGGCTGGCCGTGATCTCACTGATACCATGATGAAAATTCTGACTGAACGTGGTTATTCTTTTACGACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTTTGAGCAAGAGCTAGAGACTTCCAAGACCAGTTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTTATCACTATCGGCGCAGAGCGTTTCCGGTGTCCGGAGGTGTTGTTCCAACCATCCATGATAGGAATGGAAGCGGCAGGCATACATGAGACAACGTACAACTCCATAATGAAATGTGATGTTGATATCAGGAAAGACCTGTATGGTAATATTGTCCTTTCAGGAGGGTCAACCATGTTCTCTGGAATTGCTGATAGGATGAGCAAGGAAATTTCCGCTTTAGCTCCCAGCAGTATGAAGATCAAGGTGGTAGCGCCACCTGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCTATCCTGGCATCCCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGACCATCAATTGTGCATAGAAAATGCTTCTAG 1158 0.4646 MLLDLSKKMADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDTMMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1579 385 SUPERFAMILY Actin-like ATPase domain 157 385 IPR043129 -
Lal12g1579 385 Gene3D - 148 348 - -
Lal12g1579 385 ProSitePatterns Actins signature 2. 366 374 IPR004001 -
Lal12g1579 385 Pfam Actin 13 385 IPR004000 -
Lal12g1579 385 PANTHER ACTIN 9 384 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 36 45 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 59 70 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 71 93 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 125 138 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 150 169 IPR004000 -
Lal12g1579 385 PRINTS Actin signature 246 262 IPR004000 -
Lal12g1579 385 ProSitePatterns Actins and actin-related proteins signature. 114 126 IPR020902 -
Lal12g1579 385 ProSitePatterns Actins signature 1. 63 73 IPR004001 -
Lal12g1579 385 PANTHER ACTIN-97 9 384 - -
Lal12g1579 385 CDD NBD_sugar-kinase_HSP70_actin 18 191 - -
Lal12g1579 385 SUPERFAMILY Actin-like ATPase domain 14 163 IPR043129 -
Lal12g1579 385 Gene3D Actin; Chain A, domain 4 190 281 - -
Lal12g1579 385 Gene3D - 18 379 - -
Lal12g1579 385 SMART actin_3 15 385 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1579 Lal-Chr12 18993293 18995088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1579 9 385 Cytoskeleton Gene Families AT3G12110 96.021 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1579 K10355 - pop:7467546 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1579 12 18993293 18995088 Lal18g0603 18 5195840 5199550 PCT
Lal12g1579 12 18993293 18995088 Lal22g1358 22 16520080 16523176 PCT
Lal12g1579 12 18993293 18995088 Lal6g1699 6 19730990 19735019 PCT
Lal18g0603 18 5195840 5199550 Lal12g1579 12 18993293 18995088 PCT
Lal22g1358 22 16520080 16523176 Lal12g1579 12 18993293 18995088 PCT
Lal6g1699 6 19730990 19735019 Lal12g1579 12 18993293 18995088 PCT