LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal12g1558	ATGGGATCTGGGAATGAGGTTCATTCGGTTGAAGATTTTAATTTAGATGGGAAGTGGCTTATAGATCCAAAACAATTATTTGTTGGTCCAAAAATTGGTGAAGGTGCTCATGCCAAAGTCTATGAAGGGAAGTATAAGAATCAGAATGTTGCTGTTAAGGTTATCAACAAGGGAGAAACTCCAGAAGAGATTTCAAGGCGAGAGGCTCGATTTGGTAGAGAGGTTGCTATGTTGTCCAGGGTTCAACACAAGAATCTGGTTAAGTTTATTGGGGCCTGCAAAGAACCAGTTATGGTTATAGTAACTGAACTTCTAGTAGGTGGAACATTGCGCAAATATCTTTTGAACATGCGACCGAAGTGTTTGGATATGCGAGTGGCAGTTGGATTTGCTCTTGATATTGCTCGAGCGATGGAATGCTTACACTCCCATGGGATAATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGCAGATTATAGAACAATTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCGTTAACGGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACCGTGACTCTAAGACAAGGCGAGAAGAAGCATTACAACCATAAGGTGGATGCGTACAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAATAAGGTGCCCTTTGAAGGCATGTCTAATCTACAAGCAGCATACGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACATTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCAAATGAGCGACCGAATTTTACCGAAATCATACAGATGCTTCTTCGGTATCTCTGTACTATTTCATCATCAATGTCAGTGGCTCCGTTGCAGAGGATGAGTTCATCTGAGAATGCTGTATTGCCACCAGAATCTCCTGGTACACGTGCTTTAATGGCTACAAGAGATGATTCTATAGAAACACCAAAAGCAGCCAATATTGAAGACAGGCCTAAAGGGTTTTTGTTCTGCTTTAGACATTGTTATTGA	1065	0.4178	MGSGNEVHSVEDFNLDGKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKVINKGETPEEISRREARFGREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLVGGTLRKYLLNMRPKCLDMRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADYRTIKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKVPFEGMSNLQAAYAAAFKNTRPSAEDIPEDLALIVTSCWKEDPNERPNFTEIIQMLLRYLCTISSSMSVAPLQRMSSSENAVLPPESPGTRALMATRDDSIETPKAANIEDRPKGFLFCFRHCY	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal12g1558	354	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	146	158	IPR008271	GO:0004672\|GO:0006468
	Lal12g1558	354	SUPERFAMILY	Protein kinase-like (PK-like)	18	312	IPR011009	-
	Lal12g1558	354	PRINTS	Tyrosine kinase catalytic domain signature	102	115	IPR001245	GO:0004672\|GO:0006468
	Lal12g1558	354	PRINTS	Tyrosine kinase catalytic domain signature	140	158	IPR001245	GO:0004672\|GO:0006468
	Lal12g1558	354	PRINTS	Tyrosine kinase catalytic domain signature	214	236	IPR001245	GO:0004672\|GO:0006468
	Lal12g1558	354	PRINTS	Tyrosine kinase catalytic domain signature	257	279	IPR001245	GO:0004672\|GO:0006468
	Lal12g1558	354	CDD	STKc_MAP3K-like	32	286	-	-
	Lal12g1558	354	SMART	serkin_6	26	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal12g1558	354	Gene3D	Phosphorylase Kinase; domain 1	14	105	-	-
	Lal12g1558	354	ProSitePatterns	Protein kinases ATP-binding region signature.	32	53	IPR017441	GO:0005524
	Lal12g1558	354	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	330	-	-
	Lal12g1558	354	PANTHER	PROTEIN KINASE ATN1	1	330	-	-
	Lal12g1558	354	Pfam	Protein tyrosine and serine/threonine kinase	29	286	IPR001245	GO:0004672\|GO:0006468
	Lal12g1558	354	ProSiteProfiles	Protein kinase domain profile.	26	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal12g1558	354	Gene3D	Transferase(Phosphotransferase) domain 1	106	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal12g1558	Lal-Chr12	18806108	18809551	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal12g1558	9	354	MAP Kinase Kinase Kinase	AT5G50180	76.590	0.0	565

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Lal12g1558		PK_Tyr_Ser-Thr	2.8e-57	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal12g1558	-		-	gmx:100808329	624.394