Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1547 ATGAAAAGGGCAAGGGATGATGTTTATTCTGGCTCTCAATTCAAACGCCCATTTGGTTCATCACGTGCTGCTGATTCCTATGGCCAAAATCAAATCCCTGGTGGAGGAGGAGGAGGAGGAGGCGGTGGCGGGGGTGGAGGAGGCGGAGTAGCAACTACATCGCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAAGACCAAAGAGAAAAATATGACTTGTTCCTTGAGGTTATGAAAGATTTCAAGGCTCAAAGGATTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAGCTTTTCAAAGGGCATAATAATTTGATCTTTGGATTTAATACTTTCTTGCCAAAGGGATATGAGATAACACTTGATGAGGGTGATGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATTACTTTTGTGAACAGGATAAAGAAACGATTCCAAAATGACGACCATGTTTACAAATCTTTCTTGGACATTTTGAATATGTACCGCAAAGAGCACAAGGACATTGGAGAGGTTTACAGTGAGGTTGCAACCCTTTTTAAGGAACATCGAGATTTACTCGATGAGTTCACTAGATTCTTACCAGATACTTCTGGAGCACATTCTATGCCGCATGCTCCATTTGCTCGAAATTCACTGCAGCGCTTTAGTGAGCGAAGTTCTTCAGCACCCATGATGCGGCCAATGCAAGTAGACAAGCAACGTTATCGACGAGATAGGCTTCTTCCTTCGCATGATCGTGATCTGAGTGTTGATCACACTGATCATGATGATGACAAAACTATGATCATGCACAAGGAACAGAGGAAACGCGAGAGCAGGGATAGGAGAATTCGTGATCATGATGAGAGAGAAGCTGATCTTGATAACAACAGGGATTTGAACTCACAACGCTTTCCTGATAAAAGGAAATCTGTCAAAAAGGCTGAAGGTTTTGGACTGCCTTCTGAATTTGCTTCTTATGAGGACAAAGATTCCTTAAAGAGTGAGTCATCATGCTATGCTTTGGACAAATCACATTGCTTGAACATGTTCCTTGCATGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTGCAGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACATTCGGACCTTATGGATGAATTCAATGATTTTCTGGAGCGTTGTGAGAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCGGTGTCTACTGATGCTCATGCATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGAAGAAGCGTGAGATGGATGGAGGTAAAGAGAAGGAAAGATACAGGGACAATAAATACATGGAAAAATCCATTCAAGAGCTTGACCTTAATGACTGTGAAAGTTGTACTGCTAGCTACCGGCTTCTGCCAGCAGATTATCCAATTCCTACTGTCAGTCATAGATCTGAGCTTGGTGCTCAAGTTTTGAATGATCATTGGGTATCTGTGACATCAGGAAGTGAAGATTACTCTTTCAAGCATATGCGCAGGAATCAGTATGAAGAAAACTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGCTATTAGAGTCTGTCAGTTCGGCTGCTAAACGTGCAGAGGAATTGTATAATAACATTGCTGAAAATAAGATCAATATGGAGAGTCTGAGCCGTATTGAAGAACACTTTACCGCACTAAATGTAAGGTGCATCGAGCGTCTATACGGTGATCATGGTCTTGATGTTGTAGACATTTTGCGTAAAAATCCAACTCATTCCCTGCCTGTAATAATTACCCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGTCGTTCAGATTTCAATAAGGTCTGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGCTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGGAGGAGGATGATATTCTTCAGTCGATTTCTACTGGAAATAAACAGCCTCTAATTCCACATCTCGAATTTGAATATTCTGAGGCTGGGATTCATGAAGACCTGTATAAGCTTGTTCGATATTCATGTGAGGAGGTCTTCTCTAGTAAGGAGTTGTTTAGTAAAATTATGAGACTCTGGAATACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTTATAGGACAGAAAGGGCGGAGGACAGGAAAGAAAGCCACAATGTTTGTGATGGAAGTCCTCACGGAGACTCTATTTCAATGAATTCAAGGTTACCAAAATCGAATAAGAATGAGGCTGATGGTAGGGTAACTGAAGTAAAGAATGCTCATCGGACTAGTTTAGCTGCTAATGGTAAAGAAAATGTATCTGTGGATGGTGAACTGGTTTGTAGAGATGATCCAATGATGGATAAAGGGCAGAAAGATGTAGAGTGCAGTGTGAAAGTGTGTGGATTTAGTAAATCATTTGCCTCCGATGAACAAGTTTCTAAAAACAATGCATCAATTACAGTTAGAGAAGAAAATAGCCTGAACAGAACCAATGCAGAATTGACTGCAGGCTGTGTTACTACTCCATCACGGGCTACTGATACTGATGACTCTGTGACCAAGTGTCAGAGTGCTAATGTACCATTGGTGGAGGGATGTGACACTACAGCTCTGGTTCCAGTAGTGAATGGGGTGCTAAATGAGAGCAGTAAAGTTAAAAGCCATGAAGAGTCTGCTGGGCCTAGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGATTCCGAGGAAGATAATTTTCTTGGTTATGTAGATTCAAATGCACAGTCAATGGTCAAGTCAAAGCACAATATCGAAATAAGGAAATATCATTCTAGAAATGGAGAGGACGAGAGCTGCCCTGATGCTGGAGGTGATAATGACGCAGATGCTGATGACGAGGACAGTGACAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGCAGTGAGTCTGCTGGTGATGAAGGCTTCCGTGAAGATCATGAGGAGGAGGACGATATGGAACACGATGATGTTGATTGTAAGGCTGAGAGTGAAGGCGAAGCTGATGGAGATGCACATTCTGTTGGAGATGGTTTGCCATTGCCATTGTCAGAGAGGTTCCTTTCGTCAGTGAAACCTCTCACAAAGCATACATCAGCAGTTTCATTTGTTGAAGAAATGAAGGATTCGAGGGTGTTTTATGGAAATGATGATTTTTATGTGCTTTTTAGACTCCATCAAATTCTTTACGAAAGGCTCTTATCAGCAAAAACAAATTCAATGAGTGCAGAAATGAAATGGAAAGTGAAAAATGCTAGTTCCCTAGATCCTTACTCAAGGTATATTTTTTACAACTTCTACGAGCCCCCTCCACCTGTGGGGGTCGTTTTCAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTTCTGAGAATGCAAAGTTTGAAGATGAGTGTCGAGCGATTCTTGGGAATCAATCGTATGTGTTATTCACATTGGACAAGTTAATATATAAGTTGGTCAGACAGCTTCAAACTGTCGCAACCGATGAGGAAGACAATAAACTTCTCCAATTGTATGAGTATGAGAAGTCTCGGGAACCTGGGAAATTTAATGATTCAGTTTATCATGCAAATGCACATGTCATCCTTAATGAGGAAAATATATATCGATTGCAATGTTCTACTACTCCTTCTCGACTTTCCATCCAGATCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTATCTATTGATCCGGATTTTTCCTTTTATCTGCACAGCGATTTTCTGTCTGCATCTCCTTCCAAAAAGGAACCAAATGGTGTTATACTGCTAAGAAACAAACACAAATATCGAGGCTTAGATGAGCTCTCTGCAATTTGCTCTGCCATGGATGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATAGCTTGCAACTCATCTAAGATTTCCTATGTTCTCGACACACAAGATTTTTTCTTCCGTCCGAGAAGTAAAAGAGGAACTTCATCAAGGGCCGCATCCTCGTCTACTACCCGACATTGTCGGGAGGAAAGATTTCGCAAATTGTTGGCATTCCCGTAA 4251 0.4084 MKRARDDVYSGSQFKRPFGSSRAADSYGQNQIPGGGGGGGGGGGGGGGGVATTSQKLTTNDALSYLKEVKDMFQDQREKYDLFLEVMKDFKAQRIDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEGDAPPKKTVEFEEAITFVNRIKKRFQNDDHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKEHRDLLDEFTRFLPDTSGAHSMPHAPFARNSLQRFSERSSSAPMMRPMQVDKQRYRRDRLLPSHDRDLSVDHTDHDDDKTMIMHKEQRKRESRDRRIRDHDEREADLDNNRDLNSQRFPDKRKSVKKAEGFGLPSEFASYEDKDSLKSESSCYALDKSHCLNMFLACMYSQAFSFCEKVKEKLSSADDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSVSTDAHASRSSKLEDKDKEKKREMDGGKEKERYRDNKYMEKSIQELDLNDCESCTASYRLLPADYPIPTVSHRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEENLFRCEDDRFELDMLLESVSSAAKRAEELYNNIAENKINMESLSRIEEHFTALNVRCIERLYGDHGLDVVDILRKNPTHSLPVIITRLKQKQEEWTRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLLAEIKEIKEKQQEEDDILQSISTGNKQPLIPHLEFEYSEAGIHEDLYKLVRYSCEEVFSSKELFSKIMRLWNTFLEPMLGVPSQSYRTERAEDRKESHNVCDGSPHGDSISMNSRLPKSNKNEADGRVTEVKNAHRTSLAANGKENVSVDGELVCRDDPMMDKGQKDVECSVKVCGFSKSFASDEQVSKNNASITVREENSLNRTNAELTAGCVTTPSRATDTDDSVTKCQSANVPLVEGCDTTALVPVVNGVLNESSKVKSHEESAGPSKIEKEEGELSPNGDSEEDNFLGYVDSNAQSMVKSKHNIEIRKYHSRNGEDESCPDAGGDNDADADDEDSDNVSEAGEDASGSESAGDEGFREDHEEEDDMEHDDVDCKAESEGEADGDAHSVGDGLPLPLSERFLSSVKPLTKHTSAVSFVEEMKDSRVFYGNDDFYVLFRLHQILYERLLSAKTNSMSAEMKWKVKNASSLDPYSRYIFYNFYEPPPPVGVVFRFMNALYNLLDGSSENAKFEDECRAILGNQSYVLFTLDKLIYKLVRQLQTVATDEEDNKLLQLYEYEKSREPGKFNDSVYHANAHVILNEENIYRLQCSTTPSRLSIQIMDNMNEKPEMFAVSIDPDFSFYLHSDFLSASPSKKEPNGVILLRNKHKYRGLDELSAICSAMDGVKVINGLECKIACNSSKISYVLDTQDFFFRPRSKRGTSSRAASSSTTRHCREERFRKLLAFP 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1547 1416 MobiDBLite consensus disorder prediction 774 789 - -
Lal12g1547 1416 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Lal12g1547 1416 Pfam C-terminal domain of Sin3a protein 1117 1382 IPR031693 -
Lal12g1547 1416 ProSiteProfiles PAH domain profile. 358 427 IPR003822 GO:0006355
Lal12g1547 1416 MobiDBLite consensus disorder prediction 999 1080 - -
Lal12g1547 1416 Pfam Sin3 family co-repressor 495 586 IPR013194 -
Lal12g1547 1416 SMART hdac_interact2seq4b 492 592 IPR013194 -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 445 473 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 226 318 - -
Lal12g1547 1416 PANTHER SIN3B-RELATED 1 1399 IPR039774 GO:0003714
Lal12g1547 1416 MobiDBLite consensus disorder prediction 1011 1031 - -
Lal12g1547 1416 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Lal12g1547 1416 MobiDBLite consensus disorder prediction 773 812 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 945 966 - -
Lal12g1547 1416 Gene3D Paired amphipathic helix 359 429 IPR036600 GO:0006355
Lal12g1547 1416 MobiDBLite consensus disorder prediction 1047 1062 - -
Lal12g1547 1416 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Lal12g1547 1416 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Lal12g1547 1416 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Lal12g1547 1416 Coils Coil 565 585 - -
Lal12g1547 1416 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Lal12g1547 1416 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Lal12g1547 1416 Pfam Paired amphipathic helix repeat 380 424 IPR003822 GO:0006355
Lal12g1547 1416 MobiDBLite consensus disorder prediction 944 978 - -
Lal12g1547 1416 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1399 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 243 318 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 1 53 - -
Lal12g1547 1416 SUPERFAMILY PAH2 domain 361 427 IPR036600 GO:0006355
Lal12g1547 1416 MobiDBLite consensus disorder prediction 791 806 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 450 473 - -
Lal12g1547 1416 MobiDBLite consensus disorder prediction 14 28 - -
Lal12g1547 1416 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1547 Lal-Chr12 18707526 18718024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1547 43 136 WRKY Transcription Factor Family AT4G12020 60.000 5.02e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal12g1547 Sin3a_C 7.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1547 K11644 - gmx:100807181 2101.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1547 12 18707526 18718024 Lal13g1865 13 18093864 18100641 LSH
Lal12g1547 12 18707526 18718024 Lal24g1410 24 15465409 15476433 LSH