Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1544 ATGGATAGTTCAGAGAAGGTGGTTGCTGTGATTATGGTGGGTGGACCCACTAAAGGGACCAGATTTCGACCTCTTTCATTCAATACTCCAAAACCCCTTTTCCCTTTGGCTGGCCAGCCAATGGTTCATCATCCTATCTCTGCTTGTAAAAGGATACCCAATTTGGCTCAAATATATCTGGTTGGATTCTATGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATTTCAAATGAGCTGAAATTGCCAGTGAGATATTTGAAGGAGGACAAACCACATGGTTCGGCAGGTGGCCTTTACTACTTCCGAGATATTATCATGGAAGACAGTCCATCCCATATCTTCCTGCTAAATTGTGATGTGTGCTGCAGTTTTCCACTGCCATCCATGCTTGGTAAGCATGTTGCTATTAAGGCATTGTTGTTCTTTTTCTTCAGAAGCGTGGCACTTACGAAAGATTTCTTTATTCCTTTTACAGATGCCCACAAAAGATATGGTGGGATCGGGACAATGTTGGTAATCAAGGTGTCTGCTGAATCTGCCAGCGAGTTCGGTGAGTTAGTTGCTGATCCAACCACTAATGAGTTGCTTCATTATACTGAGAAACCTGAGACTTTCGTCAGCGATTTGATAAATTGTGGTGTCTATGTTTTTACTCCTGATATTTTTAATGCCATCGAAGATGTATCTTTGAATCGGGAAGGCAGAGCTAATCTACGTCGTGTCTCCAGCTTTGAAGCACTCCAATCTGCCACAAGGACTCTCCCTTCAGATTTTGTAAGACTGGATCAAGATATATTATCTCCTCTAGCTGGAAAGAAGCAACTGTATACGTATGAGACAATGGATTTCTGGGAGCAAATTAAAACTCCGGGAATGTCTTTGAAATGCTCTGAGTTGTATCTTGCTCAATTCCGGTATACTTCACCCCATCTTTTGGCCAGTGGAGATGGTAAAAAGAATTCTACGATTGTTGGTGACGTATATATTCATCCTTCTGCAAAAGTTCATCCATCTGCAAAGATTGGCCCCAACGTTTCAATCTCAGCTAATGTTCGTGTAGGTGCTGGCGTCAGGTTGATCAGTTGTATCATCTTGGATGATGTTGAAATTAAGGAAAATGCTGTAGTTCTAAATTCTATCGTTGGATGGAAGTCGTCGATCGGAAGATGGTCAAGGGCTGATGGTAACTTCAATGCTAAACTTGGCACAACCATCCTAGGAGAAGCTGTGATAGTTGAAGATGAGGTGGTGGTGACCAACAGCATAGTTCTTCCTCATAAGACTCTTAATGTGAGTGTACAAGAAGAAATCATCTTATAA 1323 0.4187 MDSSEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKRIPNLAQIYLVGFYEEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCSFPLPSMLGKHVAIKALLFFFFRSVALTKDFFIPFTDAHKRYGGIGTMLVIKVSAESASEFGELVADPTTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIEDVSLNREGRANLRRVSSFEALQSATRTLPSDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSELYLAQFRYTSPHLLASGDGKKNSTIVGDVYIHPSAKVHPSAKIGPNVSISANVRVGAGVRLISCIILDDVEIKENAVVLNSIVGWKSSIGRWSRADGNFNAKLGTTILGEAVIVEDEVVVTNSIVLPHKTLNVSVQEEIIL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1544 440 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 304 IPR029044 -
Lal12g1544 440 SUPERFAMILY Trimeric LpxA-like enzymes 207 429 IPR011004 -
Lal12g1544 440 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 159 440 - -
Lal12g1544 440 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 5 135 - -
Lal12g1544 440 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 5 135 - -
Lal12g1544 440 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 159 440 - -
Lal12g1544 440 CDD M1P_guanylylT_A_like_N 9 301 - -
Lal12g1544 440 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 8 304 IPR029044 -
Lal12g1544 440 Gene3D Hexapeptide repeat proteins 314 437 - -
Lal12g1544 440 Pfam Nucleotidyl transferase 151 240 IPR005835 GO:0009058|GO:0016779
Lal12g1544 440 Pfam Nucleotidyl transferase 9 147 IPR005835 GO:0009058|GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1544 Lal-Chr12 18678799 18685183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1544 K00966 - fve:101314646 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1544 12 18678799 18685183 Lal24g1414 24 15484876 15490101 LSH