Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1535 ATGCATGGGATCGGTGGTGAAGAGTGGAAACAGAGTCGGCACATGTGGCCTGTACCTTCTAACGCGACCACTGTAGTCTTCGATTCTCAATTTTTATGCAAAGATGGACGTAAGATTCGAGTTGGTGATTGTGCACTTTTCAAGCCACCCCAGGATGCCCCTCCTTTTATTGGAATAATTCGTGGTTTAATATTCGATAAAGAAGAAAACCCAAGTTTTCAAGTGAATTGGCTTTACCGACCTGCTGATTTGAAGCTCGCTAAAGGGATTTTCCTGGAAGCTGCACCGAACGAAGTCTTCTACTCCTTTCACAAGGATGAAATTTCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGGGTGTATGACATTGTTTGCAACTGTCTATGGTGGTTAACTGATCAGGACTACCTTAATAAACTACAGGAAGAAATTAACCAGCTATTAGAGAAGACAAAAATAGAAATGCATGGTGCAGTGCAGTCTGGAGGCCGTTCTCCAAAACCATTGAATGGTCCAACAACACAATCATTGAAATCTGGTTCTGATAGCATTCAAAATAGTTCTTTTGGTGTACAGAGTAAGGGAAAAAAGAGAGAACGGGGTGACCAAGGATCTGATTCAATCAAAAGGGAACGGTTATTTAAAGCAGAAGAAGGAGATTCTGGTCAATTTAGACCGGAGAGCATGTTAAAATCAGAGATTTCTAAAATTACTGATAAAGGTGGGCTAGTGGACTTAGAAGGAGTTGAAAAACTGGTACAGCTCATGCAACGTGAAAGTGGTGATAAAAAAATAGATTTGGCTGGGCGAGTAATGCTGGTCAATGTAATAGCAGTTACCGACCGGTATGACTGTCTTAGCTGGTTTGTACAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTCCAGGAGGTTCATAAGGGCAAAATTGGTGATGGTAATATGCCTAAAGAATGTGATAAGCCCGTTGAAGATTTTCTGTTGGCTTTACTTCGTGCGTTGGATAAGCTTCCTGTGAATCTTAATGCACTACAGACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCTCTCACAAAAATGCTGAAATTCAGAGGAAAGCTCGGAGTTTAGTTGACACCTGGAAGAAACGGGTTGAGGCTGAAATGAAGATGACTGATTCACAATCTGGTTCAACCCATGGTGTTTCTTGGCCAGCCAAGCCAGCATCTTCTGAGGTTTCTCAGGTTGGAAATCGGAAAACAGGAGTCTCTTCTGAGAATGTTGCAAAGAGCTCTGCAATTCTACCCTCAGTATCTAAAACTCCCCAGGCAAAGCCTAACTCTGGAGAACTATTGTCCAAGTCTTCTGCATCTCCTGGCCTAGCTAAAGGGGTGACTACCTCAGCAGGCAGTAACTCAAAAGATCGAAAGTCAGATCTACCACTAGCTCCTATCAAGGAGGAAAGGAGTAGTGGTTCTAGTCACTCTCAAAGCAACAGCTTATCTTGTTCTAGTGAACATGCAAAAACTATTGGTTCTTGGAGTTCCACTGCCGTGTCAACGAGTGGTAAAATTCATGTTGGTGCATCTCGAAATCGGAAGTCAAGCAATGGTCTACATGGGGCTGGTCTTGCTGTACCTCAGAAGGAGCCCAGGTCTACAAAAATTTCAACTAGAAATTCTCCTTCTGAAAAAGTTTCATCAACTCAAATGTCCCATGAAAAATCACCTGATCAGCCCCTTGCCAATCAAGGGAATAGTCAGCGACTGGTTGTCAGATTACCAAACACTTGTAGAAGTCCTTCAAGGGGAGCTAGCGGGGGCACTTTTGAAGAACCTGCTATTTTGTGTGGCATAGCTTCACCACCCTCTGAAAAGAATGAGAGTCATGATAGAAGAGTGAAAGTTAAAACTGATAGTTTGCAAACCAATGTTGCATCTGTTGCTAATGGAGCTTTGACTGGTTTTGAGGAAGGTAAGGGCTCTCCGATTGGTGATGATCAGTGCATGGCTAGTGAAGATGGTGATAAAGTACCTGAAACATCGAAGCCAACTAGTTCTTCATCGGGATTTGTTTCCAGATCAGGGCAGATTTATGATGCTTCTTTAAGTCCCATGAATGCATTGGTTGAGAGCTGCGTGAAATTTTCAGAAGCTAGTGCTTCTACTTTCCCTGGTGATGATGGGATGAACCTACTTGCTACTGTGGCTGCAGGGGAGATATCTAGATCCAAAAATGTTTTACCAATGGCTTCACCTGAGAGGAAGTCTCCCGCAGCAGATGAATCAAGCTCTGGCAGTGATTGCAAAACAAAACATTCTGGTGGAGGAGTTGGTTGTACCCTCTCACAATCTGATGGGGGAGCTACTGGAGAACATTATTTGGAAACTGTTGACCCATCACAATTTAATAATGATTTGAGGCATCCTGTTTTGATGGTGTCGCACATTGGTTCTGGAGATGGTGAAGCCATGTCATCCAGTTGTGTTGAAAACACTGGTGATGGCAGAACTCAAATGAATTTGTCCACTACAGATTTGTTGCAGAATGCTGAAGGTCCATGCTTACTTCCCGAAATCAAAGAGGGTGCTTCTGGAACTACATTGCCAGCTATAAATGAGACTGATGTGGCTCCTGGAGGAGCAAACCTTATAAATGACCAGAAGGAATTCGGAAGTCAATGGGCTAAAGGCAGCAGTAGTTCAGACTCTAAATTAAAATCAAGAAATTCCTCTTTTGATGAAGATAAGAAAGATGATCAAGTGGATGAGAGAATCACAGAGAATGAAAAAATATTGGTTTCAAAGGAAGTGCCTGCGAGTGTAAATGTCGATAAGGAAGTAGATGAAAAATCATCTAAGTTATCATCAGATGTTGGTAATGAGAATCAGATTATTGCAGAGAAAATGAGAGTTACTGGCATACCAGTGCAAAAGCCCTCTCCACTTGCAGAAAATGGTGAGCCTATAAATTTGAAAGCGGAAGATGTTATGCTAGCTACTGTTTCTGGCAATGCTTCGATGGTATCCAGGGATGAAAATGGCGACGACTTGAAGTCAGATGAGATTGAGCCTGACAAAAAACCAATGGATCTAGACTCAGCTGTTTCAGTTGGCATTAATGGATGTGTTGAAGAGAATTTGGGTACAAAGGATGTTATTGGTCACTGTTCTGACTTATCAGGTCATCCCAAGTTGGCAACAATTCATGGGAAAGAGAATGAAGTCTCCAAAACATCAGAGTGTAACTTAGACGGAAATGAATCTGAGGCTGTACTTGAACGGCATGCATCCAATATTAATCCGCCCCTTACAGATTCTGGGTCTGATACTGCAGTAAAACTGGACTTTGATTTGAATGAGGGGTTTCCTGTAGATGATGTAAACCAAGGGGAGATTGTTAGACAGGAAGAAGCTACTACTCCATCTGCTGTTCTTGTCCCTTGTGCATTGCCTTTTCCCATGTCTTCCATGTCTGAGAGCTTGTATGCTTCAATTACAGCGTCATCTGCTGCCAAGGGGCCTGTTGTTCCGCCAGAAATCCCAATGTGGAATAAGGGGGAACTCGGATGGAAGGGATCAGCAGCTACAAGTGCATTCCGACCAGCTGAACCTAGGAAAAATGCAGAGGCACCATCAAATGCCGGTGTTATTCCTTCTGTTGATGCCACTCCTATCAAACAAGCCCGCCCCCTTTTAGATTTTGATTTAAATGTGGCAGATGAACTCAGTTTTGATGATGTAGCTTCCCGTGGTTCTTTAGAATCTGGGACACATGATCGCAGCTCAGTAGGATTTGATCTTGATTTAAACAGAGTTGATGAGGCTGCTGAAGCTGGGTCTTTCTCTATGGGCAAACTGGATATTCCTTCTTTATCTAGCAAGCCTTCATTGTCAGGTGGGATCTCTAATGGTGGAAGTGTCTCGAGAGACTTTGATTTGAATAATGGACCAGGCCTTGATGAAGTGGGCACCGAAGTCCCAGCTCGGTGTCAGCAGATTAAGAGTTCCATACCGTTTCCTCCTGCTGTTCATGGCTCAAGAACAAATAATCCTGAATATGGTAACTATTCTTCATGGTTTTCTCCAGCCAATTCTTATTCAGCAATTACTGTCCCACCTCTTCTGCCTGGCAGGGGGGATCAGAGTTATATTGCTGGTGCACAGCGGATCATGGTTCCTACAGGTAGCACACCATTTGGTACTGAATTCTACAGAGGGCCGGTGCTTTCATCCTCGCCTGCTGTTGCTTATCCACCTACTACACCCTTTCCGTATCCAGGATTTCCATTTGATACCAGTTTCCCATTATCTTCAAACTCCTTTTCTGGCTGTTCAACAGCATTTATGGATTCATCAACGGTGGGTGGACTTTGCTTCCCTACCATGCCTTCGCAGCCTGTTGGGCCAGGTGTTGTCTCATCCACATATCCCCGCCCATACGTAATGAGTCTCCTGGGTGGTACAAGTAATGTGATTCCTGACAGCAGAAAGTGGGGAAGTCAAAGTCTGGATCTTAATTCGGGCCCTGGTGGTGGTGCAGATACAGAGGGGAGAGACGATAGATTGCCTTCTGGATTGAGGCAAATGCATGTCCCCAATTCACATGCTTTGATGGAGGAACACATGAAGATGTTTCAGGCGGCAGGTGTATTGAAGAGAAAGGAACCTGATGGTGGTTGGGATGGAGCTGATAGATCCAGTTACAAACAACCCTCATTGCAATAG 4770 0.4377 MHGIGGEEWKQSRHMWPVPSNATTVVFDSQFLCKDGRKIRVGDCALFKPPQDAPPFIGIIRGLIFDKEENPSFQVNWLYRPADLKLAKGIFLEAAPNEVFYSFHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIVCNCLWWLTDQDYLNKLQEEINQLLEKTKIEMHGAVQSGGRSPKPLNGPTTQSLKSGSDSIQNSSFGVQSKGKKRERGDQGSDSIKRERLFKAEEGDSGQFRPESMLKSEISKITDKGGLVDLEGVEKLVQLMQRESGDKKIDLAGRVMLVNVIAVTDRYDCLSWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKECDKPVEDFLLALLRALDKLPVNLNALQTCNVGKSVNHLRSHKNAEIQRKARSLVDTWKKRVEAEMKMTDSQSGSTHGVSWPAKPASSEVSQVGNRKTGVSSENVAKSSAILPSVSKTPQAKPNSGELLSKSSASPGLAKGVTTSAGSNSKDRKSDLPLAPIKEERSSGSSHSQSNSLSCSSEHAKTIGSWSSTAVSTSGKIHVGASRNRKSSNGLHGAGLAVPQKEPRSTKISTRNSPSEKVSSTQMSHEKSPDQPLANQGNSQRLVVRLPNTCRSPSRGASGGTFEEPAILCGIASPPSEKNESHDRRVKVKTDSLQTNVASVANGALTGFEEGKGSPIGDDQCMASEDGDKVPETSKPTSSSSGFVSRSGQIYDASLSPMNALVESCVKFSEASASTFPGDDGMNLLATVAAGEISRSKNVLPMASPERKSPAADESSSGSDCKTKHSGGGVGCTLSQSDGGATGEHYLETVDPSQFNNDLRHPVLMVSHIGSGDGEAMSSSCVENTGDGRTQMNLSTTDLLQNAEGPCLLPEIKEGASGTTLPAINETDVAPGGANLINDQKEFGSQWAKGSSSSDSKLKSRNSSFDEDKKDDQVDERITENEKILVSKEVPASVNVDKEVDEKSSKLSSDVGNENQIIAEKMRVTGIPVQKPSPLAENGEPINLKAEDVMLATVSGNASMVSRDENGDDLKSDEIEPDKKPMDLDSAVSVGINGCVEENLGTKDVIGHCSDLSGHPKLATIHGKENEVSKTSECNLDGNESEAVLERHASNINPPLTDSGSDTAVKLDFDLNEGFPVDDVNQGEIVRQEEATTPSAVLVPCALPFPMSSMSESLYASITASSAAKGPVVPPEIPMWNKGELGWKGSAATSAFRPAEPRKNAEAPSNAGVIPSVDATPIKQARPLLDFDLNVADELSFDDVASRGSLESGTHDRSSVGFDLDLNRVDEAAEAGSFSMGKLDIPSLSSKPSLSGGISNGGSVSRDFDLNNGPGLDEVGTEVPARCQQIKSSIPFPPAVHGSRTNNPEYGNYSSWFSPANSYSAITVPPLLPGRGDQSYIAGAQRIMVPTGSTPFGTEFYRGPVLSSSPAVAYPPTTPFPYPGFPFDTSFPLSSNSFSGCSTAFMDSSTVGGLCFPTMPSQPVGPGVVSSTYPRPYVMSLLGGTSNVIPDSRKWGSQSLDLNSGPGGGADTEGRDDRLPSGLRQMHVPNSHALMEEHMKMFQAAGVLKRKEPDGGWDGADRSSYKQPSLQ 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1535 1589 MobiDBLite consensus disorder prediction 403 602 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 565 602 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 668 707 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1022 1046 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 772 791 - -
Lal12g1535 1589 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 304 412 IPR035441 -
Lal12g1535 1589 ProSiteProfiles TFIIS N-terminal domain profile. 316 402 IPR017923 -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 906 942 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 177 247 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 759 791 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1026 1045 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 213 244 - -
Lal12g1535 1589 CDD TFIIS_I 337 400 - -
Lal12g1535 1589 Pfam BAH domain 38 142 IPR001025 GO:0003682
Lal12g1535 1589 MobiDBLite consensus disorder prediction 405 489 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 906 921 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 186 212 - -
Lal12g1535 1589 SMART TFS2_5 322 401 IPR003617 GO:0005634
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1563 1589 - -
Lal12g1535 1589 SMART BAH_4 37 152 IPR001025 GO:0003682
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1563 1577 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1514 1540 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 922 942 - -
Lal12g1535 1589 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1589 - -
Lal12g1535 1589 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 267 403 IPR035441 -
Lal12g1535 1589 Gene3D - 28 238 IPR043151 -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 1210 1230 - -
Lal12g1535 1589 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1589 - -
Lal12g1535 1589 MobiDBLite consensus disorder prediction 503 551 - -
Lal12g1535 1589 Pfam TFIIS helical bundle-like domain 350 399 IPR017923 -
Lal12g1535 1589 ProSiteProfiles BAH domain profile. 37 152 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1535 Lal-Chr12 18598989 18606866 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal12g1535 BAH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1535 - - lang:109347297 2556.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1535 12 18598989 18606866 Lal12g1535 12 18598989 18606866 ECH
Lal12g1535 12 18598989 18606866 Lal24g1424 24 15569118 15575751 LSH