Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1509 ATGATCATGGAACTTACCGATTCCATCGCCGCCACCAACAACCACCCTCCTCCGCCGTCACAAGACTCTCACTCCGGTCTCGGAATCGATCTCAACGAGATCCCATCCCCTTCCACTTTCGAAACCCTACAAGAGACAATCGAAATCGTTCGCGCCTTTCACGACAACCCTGGCCCACCGCCGGAGGGTCCTGCGGTCCTTCCGCGAGGGTTAACCGTCTGCGCTGCGTGCGGGAATCACGGATGCAGTGGTGTTCACGCCATTGTTTGTGATGGCTGCGACCGCGGCTTTCACGTGTCCTGTGTTGGCGTTCACGGCGATGGACGCCGCATCGATGAGTGGTTATGTGCTGACTGTGTCGCCGGTTGTGTGAAGAGTAAGCTGTGGCCGCTCGGGGTTAAGTCTAAGCAGCTTCTTGATATCAATGCTTCACCGCCAAGAGAGGTTGATTGTCAAGAATTGCAGGATTTGAGAAAGCAAACTGTGGGTGCCAATCCATTTGGTGCCCCATTTGCATATTCAAATTTACACAACGGGAGTGATTTTGGCTTCCAAAAAGCATCAGGAGTTGTGACACATGCTGTTAGTGTGGGTTTTGAGGATATGATCAATCATACCCAATCATTGGCCAGAAGCTTTGAGAAGGTATATGCTGATTTCCCTCTTGGAATTCATAGTAGTAGTAATAATAAAGCTTTTAGATTACGAACCCATAGTCTAAATGAGATGTTTATGCAGGGTCTTAGAGATTTTATATCTGAAAGGCATGGCGTGCTAGAGGAGGGTTGGGGCGTGGAATTTAGACAATCAGTGAGCGGCTCTGAAGTGTATGCAGTTTACCGTGCACCAGATGGGAAGGTATTTGATTCTTTGTATGAAGTAGCTTGTTATTTGGGGCTAACGTCTGGCTACAATTCTATGGAATGCAAAATAAGAAATGAAAGGTCAGGCAGTCCTCAACCATCCAGAAAAAGAAAATCAACAAAAATGCCAGTAGCTAATGGTTTTGCAGAAAAGTGGGGAACCTTTATCAATAGTCATGGTAAGAATCCTCCTTCTAATGGGTTAAGTGTTGAATGTGCTACTATCGGAAAAGCTACTGAAGCTGAAATTAGAAGAAAAGAGGATGGTCACTCTAGCCCTGAGCAATCTTCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAAGTTGATGGCAGAGCTTCATATCATGGTGTTAACCTTATTTGTCCTGTAGGTTATAAATCTGCTTGGCATGATAAGATTACTGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGAGTCGGGACCTATATTTAGGATTGGAAGGTGTTCTTGTTCGAAATATCCTGTTCCAGTTGGGTCAACCATCCTCTCAATGTCAAGTCGTTGTCAACAATTTGTGAGTCAAACCAATAAAGAAGGTGAGAGAAAGAGTAATGATGAAATGGATTATGATGGTGATGAAACTATCCAGATGATCCTTTCAGACCCTTGCGTGGCAACAGAAAATGATGTCATCAGTTGTATAGAAAGTTGCTTGAATGAAGCGTGTGATACTTTTACATCAGACGTACCACAGCTTGTTGCTGGTTCAGTTAAAGATAAAACTAGAAATTCATTAGCTGATGACTCGGGGTCAGTGGATGAAATCGGTGAAATTTTGGTGGAAGATCGGTTGTCATCCTCCGCATGGGAAGTTATGTCTCAAAAGTTGGTCAATGTCTGCAAGGATATCTGCAAGCAGAAAGGAACTCTTAAGTTCTACTGTAAACATGTTGAAAATGAAGCTTGGTTACTTGAATGCGATACATGGAATGGACAAAGTCATTCACACTTTTCTTCATTGGATAAATTTTGTGCTTCAGTTGGTCCGATTAGCATACCAGATGTAATTCATACAGAAAATGATCTGGATGGTTTCTCTGAGGTCTTAATAAAATGGTTGGGACAAGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTAGAAAAGCTTCCTGGTGTCCAAGATTCTTTGCAGTATGAACTTGTAAACAATAGAAACGATAACTATTCATTTCCAACAGTTGAGAATTGTTTTCTAGTGGTTGACCGGAGAGGTGGATCACAATATCAACAAGAAGAAGTTCAAGGTTTATATAGGAAGTCCAAGAAAGCAAGATTGATTGAAAAATGTGTTGAGGAAGATCGTTGTCCACCACCTCCTGGGAAGCCGCTATGCTCTAGGGTTCCTAATGAATATATTGGGGACATTTTCCAGGCTTGGGAACTTATACAGCGCTTTCATGAAATTCTGGACTTGAAAGAACCATTGTCGTTAGATGAGCTAGAGAAGGAACTTATCTACCCATGGTTTGATGGATTGAATTTTCTTGAGGGATCTGAGAGGGAAACAAATTGCAGTCAAGTTTTAAGTTTGCCAGGTGATGATAGTAATTGCGGATCCCCAAGGTGTGAAGTTGGTCCATCAGGTTCCATAGAAAATTCCCATGCATTTATTCAAGTTGATACAGAAGCAATGAAAGAGGCTGCTCAAGTTAAACTCACGTCTTTTACTTGTGCCAGATGCTTTGGTGTTACTTTGACTAAGGCACATAATTCCTTGCTAACAGTGCTTATAAGTGAACTGCAATCAAATGTGGCTGCACTGGTAGATCCAAGTTTTGAACCTGGAGAGACACGAAGTAGACGGGGAAGAAGGAAAGATATAGATAGTGCAGCTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTAATAATGAGTTGACTTGGCCAGAATTAGCCCGTAGATACATCTTGGCTGTCTTATCAATGGATGGTAACCTGGACTCTGCAGAAATTATTGCACGCGAAAGTGGTAAAGTATTTCGTTGCTTGCGAGGTGATGGTGGATTGCTGTGTGGTTCCATTTCTGGCGTGGCTGGGATGGAAGCAGATGCACAGTTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTACTTTGAGCAAATTCAATGAAGTACTAACAATTGAAGAAGAGGACTCTGAGGTGAAGGATGCTTCTGAAAATCTTGTGGATGGTGATGGCAGTATTCCTGAATGGGCAAAGGAACTAGAACCTGCTAGAAAACTACCAACAAATGTTGGTACCCGAATCAGAAAGTGCATTTATAATGCTCTCGAGAAGAATCCACCAGAGTGGGCAAAGAAAATTCTGGAACATTCAATTAGCAAGGAAGTGTACAAGGGAAACGCATCTGGGCCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTACTGTATCTGGTGAAGGATTGCAACAGAAGCTGTCCAAGAAAGGAAGGAAAAAGAAGACTGAAATATCTATTTCTGACATTGTCATGAAACAATGTCGCATTGTATTACGCCGTGCAGCTTCTGCAGATGATTCGAAGGTTTTTTGCAATTTGCTGGGAAGAAAGTTAATTAACTCGTCGGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGCCCCGTCCTCTTGACTTCCGGACGATTGACCTAAGATTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTTGCGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAACTAGCTGAAAATTTGTCCCAGAACTTTGAATCGCTGTATAATGAGGAGGTTGTTTCTTACGCCCAAAAGTTTGTGGAGTATGCTAAACTGGGATGCTTAAGTGCAGAAATGAGAAAAGAAGTTGACGATTTTATTGCATCAACAAGAGAGATTCCTAAAGCTCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCGTTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAATCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGATGGTAAACGTGCAATTCAAGATGTCACAGAACGTACACATATTATTTGCAAACGTAGAAAGAAAAGATTCCGTGGAGAAGTTAGTTCTCTTTACTTGGAAGCCCTAACTCATTTATCAACTGTAATGGAAGAAAAAGAATACTGGGATTACAGCATGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGGTACGTCAGCACCTTGAGCAATCTGCAGAGTTCTCTGTTGAATTGCAGCAGAAATTGCGTGCATTTTCTGTTGAGTGGAAAGGTCTGAAAGCTAAAGAAGACATCTTATCCACAAAATCTGCAAAAATTGATGTATGCTCGCTTAATACTGCTGGAGAAGTTGTTCATAAGGAAGGGTTCACTGCTACACTTATATCTGTGGCAAACTCTGATACCGATAGCCAAAATATGAATTCCATAGATGTTGGGCGGCAACATAGGAGTATCTCTGCATCAATGGAGTCTCAATGTACTCACAATTCCACTAAATCTTATCCATCACCAAATCACATGGCTCGAGAAATGAACAGTGCTGGGGGAGCAGATCATCATATTCAGGGTTGCCACCAGAAATGTGAGGGAAGGGACATATCTACTCTTGTGATATCCCAGCTAGGACAATGTGTGCCTGTTGATGCTTCTCCTCAGATTGCTGCAAATGAAGCCAAACCTTACCATGTTGAGCTCAATGCAACCAAGCGTGAAATCTCAACACTACAGGACTCCATAGCTAGTGTACAATCACAGCTACTGAAGCTCTCTATTCGCCTGGAATTTTTGGGTACTGATTGCATTGGTCGACTGTACTGGGCTTCAGCTATGCCCAGAGGACGTTCATGTATAGTTGCCGATGCAAGTGATGCGTTGTTGCACGAGAGAGGAATGACAGTCAACAGAGACTCTGTGAAGAACTTTTCTTTTATGCAGCATTCTGCACTATCTGGCAAGGACTCCTCTCCTCTTATGTCTCAACCAAGTAATGCTTTGGGCATTAGTTCACTGTGGGTTGTATATGAAACTGATGCAGAAATTGATGAGCTCTTATGTTGGCTGAAGGATAATGAGACCAAGGAAAAAGAACTGAAAGATTCCATCATACAGTGGTCAAAGTCAAGATTTCATGAGCGTCCCCGGACTGAAGATCAGGTTGAGGACCAACGACCTTTTTCTATCCCAGGAAACAGAGAGAAAATAGTGTCTAATTCTCTTGTAATGAAGGCAACGTCATTGCTGGAAAAGGAATATGGTCCTTTCTTTGAGTTGGATGCCATTGAGGCGTTGAAGAAACAGAGCAAAAAGGCCAGAAACACCAATGATGAAAAAATGTACAGGTGTGAATGCCTAGAGCCCATTTGGCCTTCTAGGAAACACTGCATGTCTTGCCACAAAACTTTTCTGAGTGATGTTGAACTGGAAAGGCACAATGATGGCAAATGTAATGCTAGTCTTCTGGCCTTGGAGAGGAATAAGGATAGTAGTGGATCCTCCAAAGGAAGAGGGAACTTGAAATGTGGTACCTCGAGTAAAAAATTCAGAGGTGATGCTGACACAGCTGGAACTTCAATCAGTGGAGGTTCAACTTCAAAGTTTAGCTCAAGTTTGACTAAATTTTCAAATTCAGGATCCTCATGTCCGTTTAACTTTGAAGATATATGTTCGAAGTTTCTAACAAATGATTCCAACAAGGAACTTGTCGGCGAAATAGGTCTTATTGGTTCAGATGGTAACCTATCATTTGTTCCTTCTGTATCTCCTTTTGTTAGTGATTCTACAGTTCTGCTATATACAGCTCAAAAGGATGATGACAATGTTGTTGGTGGTGCGTCCAAAGCATCAGAAGGCCAGGTTTCTGAAAGAGGCACTGATGGAGCTGGCATATCTGCTGGCAGGTTAGCTACAAATGAAAGAAATGAAGCAGGAAAAGGCAACACATCTTTGGTAGAACAAAGAGATGGAATGTCCTCTTTCCCTAGCCCTATGGGGGTCGATGGCTGCTGTGTGGTCCCTTTGTCTTCGTTGAGACCATTAGTTGGAAAAGCTTCACATATTTTGAGGCTACTTAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGAAAGTTGCTCTAAAACCATCAAAGGCTGAGTTGGATAGAAGACAAGCCTGGCGTGCATTCGTTAAATCTGCTCAGACGATATATGAGATGGTTCAGGCAACAATCACATTAGAGGATATGATCAAGACAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCTAAATCCTCTACTTTGTCTTCCCTTGCGCTTCGCTTTTACTCCCTTGATTCGGCCATCATATATGAGAAACTGCCCAGCTCAAGTGTTACTGACAGCTCCGGACCTTCTTCTGTAGTGGAACTGAAGCAACAACTGGTCAGTGAGGATGCAGATAAATCCAGAGCATGCCGGAAATCGAACAGGAAAAGGAAGGAATCAGGTGGCTGA 6510 0.4263 MIMELTDSIAATNNHPPPPSQDSHSGLGIDLNEIPSPSTFETLQETIEIVRAFHDNPGPPPEGPAVLPRGLTVCAACGNHGCSGVHAIVCDGCDRGFHVSCVGVHGDGRRIDEWLCADCVAGCVKSKLWPLGVKSKQLLDINASPPREVDCQELQDLRKQTVGANPFGAPFAYSNLHNGSDFGFQKASGVVTHAVSVGFEDMINHTQSLARSFEKVYADFPLGIHSSSNNKAFRLRTHSLNEMFMQGLRDFISERHGVLEEGWGVEFRQSVSGSEVYAVYRAPDGKVFDSLYEVACYLGLTSGYNSMECKIRNERSGSPQPSRKRKSTKMPVANGFAEKWGTFINSHGKNPPSNGLSVECATIGKATEAEIRRKEDGHSSPEQSSDGLPLQFKDFFVLSLGKVDGRASYHGVNLICPVGYKSAWHDKITGSLFTCEVLEGGESGPIFRIGRCSCSKYPVPVGSTILSMSSRCQQFVSQTNKEGERKSNDEMDYDGDETIQMILSDPCVATENDVISCIESCLNEACDTFTSDVPQLVAGSVKDKTRNSLADDSGSVDEIGEILVEDRLSSSAWEVMSQKLVNVCKDICKQKGTLKFYCKHVENEAWLLECDTWNGQSHSHFSSLDKFCASVGPISIPDVIHTENDLDGFSEVLIKWLGQDRFGLDVEFVQEVLEKLPGVQDSLQYELVNNRNDNYSFPTVENCFLVVDRRGGSQYQQEEVQGLYRKSKKARLIEKCVEEDRCPPPPGKPLCSRVPNEYIGDIFQAWELIQRFHEILDLKEPLSLDELEKELIYPWFDGLNFLEGSERETNCSQVLSLPGDDSNCGSPRCEVGPSGSIENSHAFIQVDTEAMKEAAQVKLTSFTCARCFGVTLTKAHNSLLTVLISELQSNVAALVDPSFEPGETRSRRGRRKDIDSAAPAKRTKLNMLPNNELTWPELARRYILAVLSMDGNLDSAEIIARESGKVFRCLRGDGGLLCGSISGVAGMEADAQLLAEATKKIFGTLSKFNEVLTIEEEDSEVKDASENLVDGDGSIPEWAKELEPARKLPTNVGTRIRKCIYNALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLATVSGEGLQQKLSKKGRKKKTEISISDIVMKQCRIVLRRAASADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVPRPLDFRTIDLRLAAGAYGGSHEAFLEDVCELWNNVRVAFGDQPDLVELAENLSQNFESLYNEEVVSYAQKFVEYAKLGCLSAEMRKEVDDFIASTREIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKRAIQDVTERTHIICKRRKKRFRGEVSSLYLEALTHLSTVMEEKEYWDYSMGERTFLLKFLCDELLNSSLVRQHLEQSAEFSVELQQKLRAFSVEWKGLKAKEDILSTKSAKIDVCSLNTAGEVVHKEGFTATLISVANSDTDSQNMNSIDVGRQHRSISASMESQCTHNSTKSYPSPNHMAREMNSAGGADHHIQGCHQKCEGRDISTLVISQLGQCVPVDASPQIAANEAKPYHVELNATKREISTLQDSIASVQSQLLKLSIRLEFLGTDCIGRLYWASAMPRGRSCIVADASDALLHERGMTVNRDSVKNFSFMQHSALSGKDSSPLMSQPSNALGISSLWVVYETDAEIDELLCWLKDNETKEKELKDSIIQWSKSRFHERPRTEDQVEDQRPFSIPGNREKIVSNSLVMKATSLLEKEYGPFFELDAIEALKKQSKKARNTNDEKMYRCECLEPIWPSRKHCMSCHKTFLSDVELERHNDGKCNASLLALERNKDSSGSSKGRGNLKCGTSSKKFRGDADTAGTSISGGSTSKFSSSLTKFSNSGSSCPFNFEDICSKFLTNDSNKELVGEIGLIGSDGNLSFVPSVSPFVSDSTVLLYTAQKDDDNVVGGASKASEGQVSERGTDGAGISAGRLATNERNEAGKGNTSLVEQRDGMSSFPSPMGVDGCCVVPLSSLRPLVGKASHILRLLKINLLDMDAALPKVALKPSKAELDRRQAWRAFVKSAQTIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLSSLALRFYSLDSAIIYEKLPSSSVTDSSGPSSVVELKQQLVSEDADKSRACRKSNRKRKESGG 2169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1509 2169 ProSitePatterns Zinc finger PHD-type signature. 74 119 IPR019786 -
Lal12g1509 2169 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 23 2167 - -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 7 27 - -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 901 918 - -
Lal12g1509 2169 Pfam Bromodomain 1173 1227 IPR001487 GO:0005515
Lal12g1509 2169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lal12g1509 2169 PANTHER OS02G0192300 PROTEIN 23 2167 - -
Lal12g1509 2169 Gene3D - 1122 1249 IPR036427 GO:0005515
Lal12g1509 2169 SUPERFAMILY Bromodomain 1119 1239 IPR036427 GO:0005515
Lal12g1509 2169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1284 1331 IPR013083 -
Lal12g1509 2169 ProSiteProfiles Zinc finger PHD-type profile. 71 122 IPR019787 -
Lal12g1509 2169 ProSiteProfiles Zinc finger PHD-type profile. 1282 1332 IPR019787 -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 1832 1860 - -
Lal12g1509 2169 SUPERFAMILY FYVE/PHD zinc finger 1273 1333 IPR011011 -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 2149 2169 - -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 311 331 - -
Lal12g1509 2169 CDD PHD1_Lid2p_like 1284 1329 - -
Lal12g1509 2169 CDD PHD_SF 73 119 - -
Lal12g1509 2169 Pfam Methyl-CpG binding domain 250 303 IPR001739 GO:0003677
Lal12g1509 2169 ProSiteProfiles FYR domain FYRN motif profile. 387 440 IPR003888 GO:0005634
Lal12g1509 2169 SMART PHD_3 73 120 IPR001965 -
Lal12g1509 2169 SMART PHD_3 1284 1330 IPR001965 -
Lal12g1509 2169 SUPERFAMILY FYVE/PHD zinc finger 71 125 IPR011011 -
Lal12g1509 2169 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1364 1408 IPR028942 -
Lal12g1509 2169 Gene3D - 388 521 - -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 898 918 - -
Lal12g1509 2169 Coils Coil 1571 1591 - -
Lal12g1509 2169 Gene3D - 249 337 - -
Lal12g1509 2169 Pfam PHD-finger 1284 1330 IPR019787 -
Lal12g1509 2169 Pfam PHD-finger 73 120 IPR019787 -
Lal12g1509 2169 MobiDBLite consensus disorder prediction 1947 1987 - -
Lal12g1509 2169 CDD Bromodomain 1131 1237 - -
Lal12g1509 2169 ProSitePatterns Zinc finger PHD-type signature. 1285 1329 IPR019786 -
Lal12g1509 2169 SUPERFAMILY DNA-binding domain 251 331 IPR016177 GO:0003677
Lal12g1509 2169 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1509 Lal-Chr12 18318856 18332610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1509 21 2169 C2H2 Transcription Factor Family AT3G01460 44.727 0.0 1705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal12g1509 Bromodomain 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1509 K22768 - gmx:100791814 2792.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1509 12 18318856 18332610 Lal12g1509 12 18318856 18332610 ECH
Lal12g1509 12 18318856 18332610 Lal13g1875 13 18191517 18205245 LSH
Lal12g1509 12 18318856 18332610 Lal24g1432 24 15619610 15634873 LSH