Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1508 ATGGATTCTGGACATATTTTCTTTGATACTTCTACATGTCGCCGGAACAACATGCTCTTCCTTGGAAATGGTGATTTTTCTTTTCGAGGAAGATCGATGATGAGTATGGAGGAAAGCTCGAAGAGGCGACCTTTTTTTAGCTCACCCGATGAATTGTTTGATGATGAGTATTACGAGGACCAGTTACCAGAGAAGAAGCGACGCCTCACTTCCGATCAGGTCCATCTGTTGGAGAAAAGCTTTGAAGAAGAGAACAAACTGGAGCCGGAGAGGAAGACTCAGTTGGCGAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCTGTGTGGTTCCAGAACCGCAGGGCTCGATGGAAGACAAAGCAACTCGAAAGGGATTACGATGTTCTTAAGGCTTCCTATGATTCCCTACTTTCATCATATGATTCCATTGTGAAGGACAATGAGAAACTCAAATCTGAGATGGTATCCTTACATGAAAAGCTTCAAATTGAAGCTAAAGACATGCCTAAAGAGGAAACGATAATATCAGATAAAAAAACTGATACACTGTCAGTGGATATAGCTGAAATCATCAGCATGAAGATCGTCGAGGACAGGGTGAGCATCGGGAGTGTTGGAAGTGCGGTTGTCGATGATGGAAGTGATGATGGTACAAGTTACTTGTCAGATGTGTTTGTGGCACATGAAAGTCAGCACCAAAACAATGAGGAAGGAGAGGCATTGGGTTGGTGGGGTAATATGTTACATAATGGAGCACCAGTGCTTTTTTAA 771 0.4397 MDSGHIFFDTSTCRRNNMLFLGNGDFSFRGRSMMSMEESSKRRPFFSSPDELFDDEYYEDQLPEKKRRLTSDQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSIVKDNEKLKSEMVSLHEKLQIEAKDMPKEETIISDKKTDTLSVDIAEIISMKIVEDRVSIGSVGSAVVDDGSDDGTSYLSDVFVAHESQHQNNEEGEALGWWGNMLHNGAPVLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1508 256 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lal12g1508 256 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lal12g1508 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 216 IPR045224 GO:0003700
Lal12g1508 256 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Lal12g1508 256 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lal12g1508 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 216 - -
Lal12g1508 256 SMART HOX_1 63 124 IPR001356 GO:0003677
Lal12g1508 256 CDD homeodomain 65 121 IPR001356 GO:0003677
Lal12g1508 256 Gene3D - 59 127 - -
Lal12g1508 256 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lal12g1508 256 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lal12g1508 256 SUPERFAMILY Homeodomain-like 56 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1508 Lal-Chr12 18314960 18318150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1508 1 245 Homeobox Transcription Factor Family AT3G01470 55.435 1.66e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal12g1508 Homeodomain 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1508 K09338 - gmx:100797836 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1508 12 18314960 18318150 Lal12g1508 12 18314960 18318150 ECH