Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1500 ATGGAGCATGTATCAGAAAAAAGATTTCCTCTCCATGCAAAAGAATATGAGTTATATGAAGAAGTTGGTGAAGGTGTTAGTGCCTCAGTTTACAGGGCCCTCTGTATTCCTCTCAATGAGACAGTTGCCATCAAGGTTCTTGATCTCGAGAAGTGCAATAACGATCTGGATGGCATTAGGAGAGAGGTGCAGACTATGAGCTTGATTAATCATGTAAATGTTTTACGGGCACATTGCTCTTTTACCGCTGGACACAACCTTTGGATTGTGATGCCATACATGGCTGGAGGGTCCTGCCTTCACATAATGAAATCTTCTTATCCTGAGGGTTTTGACGAACCTGTTATTGCTACTTTATTGGTTGAGGTTCTCAAGGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATATTAAGGCTGGGAATATCTTACTTGATTCTAATGGTTCAGTCAAAGTAGCTGACTTTGGAGTGTCAGCATGTATGTTCGATACTGGAGATAGACAGCGTTCTAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTCATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCAATGAAAGTTTTACTAATGACTTTGCAAAACGCCCCTCCTGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTCGCCACCTGCTTAGTGAAAGATCCAAAGAAACGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCCCGTCCCACCAGTTATCTTGCTCGCACCATTCTAGATGGCCTTGCTCCATTAGGAGATCGTTTTAGAATGCTGAAGGCAAAAGAGGCAGATTTATTGGTGCAGAACCAGGCTCTTTATGAGGATAAGGAGCAATTATCTCAGAAAGAGTATATTCGAGGAATTAGTGCCTGGAATTTCAACCTGGAGGATTTAAAAACTCAAGCTGCTCTTATTCAAGATGATGGCATCCCAAATGCAGAAGTGCTACAAATGGATAAGAAGCAGAACAACCAATATGATGACTTCAAGGTTCCAGAAGAGACGCTATCTGCAGTCGCACCTAATCATTTAGATACTGCACCCACATTGGATACGGAGGATGGAATCAACAATCTTCAGGATTTGGAGAGTTCGCTTGGTTCATTTCCTATTAAACCTCTCCAAGCACTTAAAGGTTGTTTTGATATATGTGAGGATGATGTCAATAATACTAGTCCAAGAGATAACAATGAAAGTTCTGGATCAAGTAGTTTGTTGCCACAAAATGCTATAAATCAGAATAAAAAGTTTTTGAGTGGTTCTTTGTTGCCTGATAATTTTCTTTCTCCGAAAAAGGTTGTCACTGATGGGGACAGGGATTACCTACAAACGAAATATTATTCTGAGCGGAATCATAGTGGTCCTTTGTTACTTCGGCAAAAGAGAGATACCAACAACCTTCCTTTGGTTGATGACACATCAGAAGGAGCAGTTGTCCAGCGCAAGGGGCGGTTTAAGGTCACATCGGCAGATCCAATGGGTCCTTCAAATAGCAATTCTGGCCCAGTTTTTGGTGGTCCTAGCAGTCCACCAAATCAGAAATCCATGGCTGCCTCTATTCTTCAACCACTGCAGTGTATCTTGCAACAGAACAGTTTGCAGAGGGAAGAAATTATTAAATTAATAAAGTATGCTGAGAATTCTTCTGCCAAGAATACAGAATCAACAGAGGCAGGGGCAGTTGATCTTTCACAGGTTCCACCTGTGACAAATAGGGAGAGAGAGCTGAATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGATTCTTGTTGAGGAACTGCAAAAACAAAGAATGAGAAATGTCCAGTTAGAGAAGCAATTGAGCTTTTCTAAGGCCAACAAAGTTGAAAAATGA 1995 0.41 MEHVSEKRFPLHAKEYELYEEVGEGVSASVYRALCIPLNETVAIKVLDLEKCNNDLDGIRREVQTMSLINHVNVLRAHCSFTAGHNLWIVMPYMAGGSCLHIMKSSYPEGFDEPVIATLLVEVLKALVYLHAHGHIHRDIKAGNILLDSNGSVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKHARPTSYLARTILDGLAPLGDRFRMLKAKEADLLVQNQALYEDKEQLSQKEYIRGISAWNFNLEDLKTQAALIQDDGIPNAEVLQMDKKQNNQYDDFKVPEETLSAVAPNHLDTAPTLDTEDGINNLQDLESSLGSFPIKPLQALKGCFDICEDDVNNTSPRDNNESSGSSSLLPQNAINQNKKFLSGSLLPDNFLSPKKVVTDGDRDYLQTKYYSERNHSGPLLLRQKRDTNNLPLVDDTSEGAVVQRKGRFKVTSADPMGPSNSNSGPVFGGPSSPPNQKSMAASILQPLQCILQQNSLQREEIIKLIKYAENSSAKNTESTEAGAVDLSQVPPVTNRERELNFQVIQLQQSIGILVEELQKQRMRNVQLEKQLSFSKANKVEK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1500 664 Gene3D Transferase(Phosphotransferase) domain 1 97 310 - -
Lal12g1500 664 Coils Coil 633 660 - -
Lal12g1500 664 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1500 664 MobiDBLite consensus disorder prediction 530 561 - -
Lal12g1500 664 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 659 - -
Lal12g1500 664 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lal12g1500 664 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1500 664 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lal12g1500 664 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 659 - -
Lal12g1500 664 CDD STKc_OSR1_SPAK 14 277 - -
Lal12g1500 664 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Lal12g1500 664 MobiDBLite consensus disorder prediction 537 561 - -
Lal12g1500 664 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1500 Lal-Chr12 18211132 18221238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1500 1 654 MAP Kinase Kinase Kinase Kinase AT5G14720 66.814 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lal12g1500 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1500 K08835 - gmx:100778837 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1500 12 18211132 18221238 Lal12g1500 12 18211132 18221238 ECH
Lal12g1500 12 18211132 18221238 Lal13g1889 13 18384604 18394497 LSH