Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1493 ATGGACAAAAGACCGTGTAACTCATCTGAAGATCCTGAAGTGAGAAAGGGTCCATGGACTATGGAAGAAGATATGATCTTGATTAACTATATAGCAAATCATGGTGAAGGTGTATGGAACTCTTTAGCCAAAGCTGCTGGTCTTAAACGCACCGGAAAGAGTTGTCGGCTCCGGTGGCTAAACTATCTCCGCCCTGATGTTAGAAGAGGAAATATTACATCGGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGA 273 0.4322 MDKRPCNSSEDPEVRKGPWTMEEDMILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITSEEQLLIMELHAKWGNR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1493 90 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lal12g1493 90 CDD SANT 18 63 IPR001005 -
Lal12g1493 90 Gene3D - 16 68 - -
Lal12g1493 90 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 90 - -
Lal12g1493 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Lal12g1493 90 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Lal12g1493 90 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 90 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal12g1493 90 SMART sant 15 65 IPR001005 -
Lal12g1493 90 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1493 Lal-Chr12 18149259 18149629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1493 10 90 MYB Transcription Factor Family AT3G01530 83.951 1.37e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal12g1493 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1493 K09422 - zju:107415291 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1493 12 18149259 18149629 Lal12g1493 12 18149259 18149629 ECH
Lal12g1493 12 18149259 18149629 Lal13g1890 13 18399940 18403593 LSH
Lal12g1493 12 18149259 18149629 Lal24g1445 24 15730599 15734433 LSH