Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1488 ATGTCTTCATTGTATCAAAAAACAAATGATGTTTTCATTAGCTTTAGAGGTGAAGATACTAGAAGAAACTTCATTAGCCATCTTTATTCTTCACTTTCTCAAGCTTCCATCAAAACATATATAGATACTAACATGCAAAAAGGTGATACTTTATGGCCAAAACTGTGCCAAGCAATTCATAACTCAGATATAGCACTTATAGTTTTTTCAAAAAACTATGCTTTTTCAAAATGGTGCTTAAAAGAACTTGTCAAAATACTCAAATGCAGAAAAAGTGAAGGACTAGTAGTTATACCTGTGTTCTATAAAGTAGACCCTTCATGCATTAAAACACAATCTGGGTGTTATAGTAAAGCATTCTCAAAACATGAGAAAGATTTGCTACAAAAAAGTGACAATGAATATGTTCATAAGAAATTGTCTAAGTGGAAAACTGCTTTGGCTGAAGCTGCTAATATATCTGGATGGGATTCTAGTAATAGTGACTATAAGAATGATTCTCAATTCATCGAGAAAATTATCGAAGATATCTTGCGAAAGCTGTACTTAAGGTACCCTATTGAACTAGAGGGTGAAGGCCTTGTTGGAACTGACAAAATCTGTGAACACTTCAAGTTTTTGCTGTCAAGAAACAAACACAATCGGATAGCGAAGAATGTTAAAGTGATTGGAGTTTGGGGAATGGGAGGAATTGGTAAGACAACCATAGCGAAAGTTGTGTTTTCTCGATTCTTTCCCCGATATGATACTGTATGCTTCTTGGAAAATATAAGAGAAGAATCGAAAAGGCTTGGACTAACAACTTTACGTGATAAACTTCTCTTCGATCTACTAAAGGATGACAATCCCAAACTTAATCGTATCGGATCGACATTGATTGCAAGGAGGCTCAGCGATAAAAAAGTTTTCATTGTACTTGACGATGTCGATAGTTTAGATCAAATGGATGAGTTGTGCAGTGTATATAAGTATGTAGGCCCTGATAGTAAAATCATTATAACAACAAGAAATATGCATTTACTTAGTGGAAGAGTTGATGAGATATATAAGGCAGATATATGGAGTTTTCATGATTCTTTAGAGCTTTTTTGCTTACATTCCTTTAAGCAAAGATGTCCTCAAAAGGGGTATGAGGATCTCTTAAAAACTGCAGTTGATTATGCAGGGGGTGTTCCTTTAGCCTTAAAAGTTTTGGGTTCAAATCTTCATTCTAGAAGTATTGAATTTTGGGACAGTGAATTGAAAAAACTCAAGAACTATCCTTGTCACAACATTCAAAATGTGTTACAAGTAAGCTTTGATGGATTAGACATTCCACAACAGAAAATATTTCTAGACATTGCATTCTTTTTCAAAGATGAAGATAAAGATTTTGTCGAAAGGATACTAAATGCAAGTGACTTCTATGCTACTAGTGGAATAGCAGTTCTTGAAGAAAAAGCACTTATAACTGTTTCAAAAGGCAAGAGAATACAAATGCATGACTTGATTCAAGAAATGGGTCTGAACATAGTTCGGCAAGGCATCGAAGATTCTGGAAAACGTAGTCGGTTGAGGGATATCGGAGAAGTTTACGATCTACTTGAAAATAAAAAGGGGAGTGATGCAGTTGAAGGGATAGCATTAGATTTGTCGCGTATTGATGATGTGCTTAACTTGAGTGCTGACACATTCAATATGATGACTTATCTAAGATTTCTGAAATTATATATCCCTTCGGGTAAGAGATCAGGCAAAGTGAACTATCCTCGATCCCTTGATAAAATCTCTGATAAACTGAGGTACCTTGAGTGGCATGGATGTCATTTGAAGCATCTTCCGTCATCTTTTTGTGCGAAGATGCTGGTCGAGATTCGGATGCCGCATAGCCATGTTACAGAACTTTGGCAAGGAGTACAGGATGTTATGAATTTAAAGGTAATCGATCTACATGAGTGCACACGGTTGAAGAATCTCCCGGATTTGTCTAAAGCATCGAAACTGAAAAGGATGTACCTCACTGGTTGTGAGAGTTTGTTGGCTGTTCATCCATCTGTTTTATCTCTAGACACGCTTGAAACTTTGATGCTGGAACGCTGCATAAAACTCAAGAATCTTAAGAGCGATAAGCGTTTAAGTTCTCTATGGAATGTTAGCATCAATGGCTGCACAAGTATCAGGGAGTTTTCAATCTCGTCGGATTCAATGACAAATTTTGATTTAAGCAATACAGGAATTGAAAATTTTCAATCGTCAATTCGGAATCTTCAAAATCACACACTCAAGTACCTTGCAATTTCCAATTTCAGAGCAGTATTAGAAAAACAGAAGCTGCATGTTCTATTTGATGGCTTAGCGTCTCTAACGCGTTTAGATTTGAAGGATTGTCGTAAAATATCCGAATTACCTGACAACATCAGCAACTTATCATGCTTGTATGAGCTAAGACTAGATGGAAGCAGCATAGAGCAATTGCCTGAAAGCATCAAGCATCTTCAGTACTTGAAAATTCTGTCCATAAACAATTGCACGAAGCTTCGGTATCTACCAGAGCTTCCGCCAAATTTTAGAGAGTTGAATGCTGCTAACTGCAGCTCATTGGTGACATTATCCCCTCTTATGTTTCTTGGCTCATTGTGTAAATCTCATTACAAATACATGTCATTCAAGAATTGCATGAAACTAGAAGGCGATCGTGTTATCGAAATCTTGTTATCGACGAGGGCATTATTTCACGCGTTTGTGATTGTTTGTTTACCAGGAAGCAAAGTGCCAAGGCAGTTCACATATCGAACAAGGAAATCTTCATTCACTATTAGTCTTCCCCCTAAAGATGGATTACAAGGCATTATGTTGAGTGTGGTTCTTTCGTATCCATTGGAGGAATTGAAGAAGCACGGTGCTATAATCTGGTGTCAATGCTACTTGGATGATGGTACAAAGCTAGGACTTCCATCATCTACATTGGATCCTAATGCATGGAATCATAAAGCTATCACAGAGTTGAATTCAGATCATGTTTGTATATGGTGTGATTCAGATCATTTTAACAGCATCTATGAAGGTCATGGACATGAAGTTTCATTTAAGTTCTATGTTACAAATGATAAGAAAGAACATGAAGTTTTAGACATATGTCCCAAAGAGTGTGGAGTTCATTTCATATTTGACTCACAAGTTTTATACCAATCACAACAACATAGAGAAATATCTGATGAGAAGGAATGCAATGACCAACATAATCAACAACAGGATTTCAACAACAATTGTTCTTGTTCTGTAAACTGCTTATCTGGTATGCAACATTCTAATCTGTTTTACTTTGTTAAATCTCTTCTCTAA 3321 0.3637 MSSLYQKTNDVFISFRGEDTRRNFISHLYSSLSQASIKTYIDTNMQKGDTLWPKLCQAIHNSDIALIVFSKNYAFSKWCLKELVKILKCRKSEGLVVIPVFYKVDPSCIKTQSGCYSKAFSKHEKDLLQKSDNEYVHKKLSKWKTALAEAANISGWDSSNSDYKNDSQFIEKIIEDILRKLYLRYPIELEGEGLVGTDKICEHFKFLLSRNKHNRIAKNVKVIGVWGMGGIGKTTIAKVVFSRFFPRYDTVCFLENIREESKRLGLTTLRDKLLFDLLKDDNPKLNRIGSTLIARRLSDKKVFIVLDDVDSLDQMDELCSVYKYVGPDSKIIITTRNMHLLSGRVDEIYKADIWSFHDSLELFCLHSFKQRCPQKGYEDLLKTAVDYAGGVPLALKVLGSNLHSRSIEFWDSELKKLKNYPCHNIQNVLQVSFDGLDIPQQKIFLDIAFFFKDEDKDFVERILNASDFYATSGIAVLEEKALITVSKGKRIQMHDLIQEMGLNIVRQGIEDSGKRSRLRDIGEVYDLLENKKGSDAVEGIALDLSRIDDVLNLSADTFNMMTYLRFLKLYIPSGKRSGKVNYPRSLDKISDKLRYLEWHGCHLKHLPSSFCAKMLVEIRMPHSHVTELWQGVQDVMNLKVIDLHECTRLKNLPDLSKASKLKRMYLTGCESLLAVHPSVLSLDTLETLMLERCIKLKNLKSDKRLSSLWNVSINGCTSIREFSISSDSMTNFDLSNTGIENFQSSIRNLQNHTLKYLAISNFRAVLEKQKLHVLFDGLASLTRLDLKDCRKISELPDNISNLSCLYELRLDGSSIEQLPESIKHLQYLKILSINNCTKLRYLPELPPNFRELNAANCSSLVTLSPLMFLGSLCKSHYKYMSFKNCMKLEGDRVIEILLSTRALFHAFVIVCLPGSKVPRQFTYRTRKSSFTISLPPKDGLQGIMLSVVLSYPLEELKKHGAIIWCQCYLDDGTKLGLPSSTLDPNAWNHKAITELNSDHVCIWCDSDHFNSIYEGHGHEVSFKFYVTNDKKEHEVLDICPKECGVHFIFDSQVLYQSQQHREISDEKECNDQHNQQQDFNNNCSCSVNCLSGMQHSNLFYFVKSLL 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1488 1106 Gene3D - 191 347 IPR027417 -
Lal12g1488 1106 PRINTS Disease resistance protein signature 222 237 - -
Lal12g1488 1106 PRINTS Disease resistance protein signature 296 310 - -
Lal12g1488 1106 PRINTS Disease resistance protein signature 388 402 - -
Lal12g1488 1106 PRINTS Disease resistance protein signature 633 649 - -
Lal12g1488 1106 SMART till_3 8 153 IPR000157 GO:0007165
Lal12g1488 1106 Gene3D Ribonuclease Inhibitor 540 728 IPR032675 -
Lal12g1488 1106 PANTHER NB-ARC DOMAIN PROTEIN 13 895 - -
Lal12g1488 1106 Gene3D - 4 185 IPR035897 -
Lal12g1488 1106 Pfam NB-ARC domain 219 423 IPR002182 GO:0043531
Lal12g1488 1106 Pfam TIR domain 10 187 IPR000157 GO:0007165
Lal12g1488 1106 Gene3D Ribonuclease Inhibitor 729 898 IPR032675 -
Lal12g1488 1106 Gene3D - 355 437 IPR042197 -
Lal12g1488 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Lal12g1488 1106 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 895 IPR044974 GO:0006952
Lal12g1488 1106 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Lal12g1488 1106 SUPERFAMILY L domain-like 492 888 - -
Lal12g1488 1106 Pfam Leucine Rich Repeat 615 633 IPR011713 -
Lal12g1488 1106 ProSiteProfiles TIR domain profile. 7 181 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1488 Lal-Chr12 18107437 18111924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1488 7 828 WRKY Transcription Factor Family AT4G12020 29.665 6.68e-83 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1488 - - ccaj:109795381 1144.41