Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1479 ATGGAAAACTCTTCTATTCCAAAACAATCTCAATCTATCTTCACCCTCGTAGCTTCAAGACAACTCAATTCATTCCAATGCCGAAAACGACCTCGTTTTGATGGGTTCGTTTCTGGATTCAACGAAACTGCAGCTCTCGCTGTTCAACATGATGCTGTAAACACTATTCCCCTTTCTCTCTCTTTCTGCAAGACTTCGAAATTTTCGCACATACTCGCTTTATCTGATGAGGATGGATATATAAACTTGTTTGATACTCGCCGCAACTTGTCTAAATCCACATGCTACGAAGATAATGCAGAGAAATCTAAGATTTGCGAATGGGTTACACATCATAATGCTGTTTTTGATGTCTGTTGGATCAAGGAAGATACACAGATTCTCACAGCTTCTGGTGATCATACAATGAAGTTATGGGATGTTCAAGAAAAGAAATGTATTGGAGTGTTGGTGGGGCACACAGGGAGTGTGAAATCTATGTCTTCTCATCCAACTAATTCTGATATAATTGTCTCTGGTTCAAGAGATGGATCTTTTCGTTTTTGGGACTTACGATGCAAATCCACTGCTAATAGGTTTGGGGACCCTAGCATATGTACTTCGACGGAAGTTGTCAAAGAAGCACATATTTCGTCTCAAGCAAGACGAGTTAGGAAGAGCAAGGCTGCTTCCATGAGCATTACATCTGTTCTTTGCCTCAAGGATCAGGTCTCCATAGCCACTGCTGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGACACTAGAAACTTGAAAACTTTTGTAACGCAGACATGTCCTCATCCCCAGTCTACAGAAAAGAAAAGATTACATGGTATATCTAGCTTGTCCCAGGATGACAGTGGACTTTTTCTTTCAGCCTCTTGCATGGATAACCGAATATATTTGTATAACGTCCTTCAACTTGAAAAGGGACCTATAAAATATTTTTCTGGAAGTCAAATAGACTCCTTTTTTGTAAAGGCTTCAATTAGCCCAGATGCATGTCACCTAGTCAGTGGTTCTAGTGATGGAAAAGCCTATGTTTGGCAGGTTAACAAGCCTCAAGAGAAACCACTGGCTTTGAAAAGTCATGATGAAGGAGAAGTTACAGTAGTTGACTGGTGCCCCACTGAAATTGGCAAATTAGCAACCGCTTCTGATGATCACACAGTTCGAATTTGGAATAAAAACAGTTATGTCTGCGATAGAAAGTTTCCATATTCCATCCGAAGAAGAGTGTTGGCAATGCCTAGAACAGAATGTAAAATGCTTTTAAATAGTGAAGAAATGTGTCTGAAGTCAGAACATAAAGCTTTTTTATCCAATGAAACACCGCGCCAACCAATTAAGCCAGACATTCCAATAACACCATCAAAAGTACATACATCTGAAGGCCATAAGGACCAACTTTCTTCAGGTTTCGATCCGACTGAATCATCCGAAAAATCTCCACAATCTACTTCGAAGAGCCCTTCATCTGTTTTGAGCCCTCCATCCTCCCTCAAAAGAACTATAAGAGACTACTTTGTAGCTTCTTCATGA 1542 0.404 MENSSIPKQSQSIFTLVASRQLNSFQCRKRPRFDGFVSGFNETAALAVQHDAVNTIPLSLSFCKTSKFSHILALSDEDGYINLFDTRRNLSKSTCYEDNAEKSKICEWVTHHNAVFDVCWIKEDTQILTASGDHTMKLWDVQEKKCIGVLVGHTGSVKSMSSHPTNSDIIVSGSRDGSFRFWDLRCKSTANRFGDPSICTSTEVVKEAHISSQARRVRKSKAASMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKTFVTQTCPHPQSTEKKRLHGISSLSQDDSGLFLSASCMDNRIYLYNVLQLEKGPIKYFSGSQIDSFFVKASISPDACHLVSGSSDGKAYVWQVNKPQEKPLALKSHDEGEVTVVDWCPTEIGKLATASDDHTVRIWNKNSYVCDRKFPYSIRRRVLAMPRTECKMLLNSEEMCLKSEHKAFLSNETPRQPIKPDIPITPSKVHTSEGHKDQLSSGFDPTESSEKSPQSTSKSPSSVLSPPSSLKRTIRDYFVASS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1479 513 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Lal12g1479 513 MobiDBLite consensus disorder prediction 442 500 - -
Lal12g1479 513 Pfam WD domain, G-beta repeat 361 395 IPR001680 GO:0005515
Lal12g1479 513 Pfam WD domain, G-beta repeat 110 140 IPR001680 GO:0005515
Lal12g1479 513 Pfam WD domain, G-beta repeat 145 183 IPR001680 GO:0005515
Lal12g1479 513 Gene3D - 25 190 IPR015943 GO:0005515
Lal12g1479 513 MobiDBLite consensus disorder prediction 469 500 - -
Lal12g1479 513 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Lal12g1479 513 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Lal12g1479 513 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Lal12g1479 513 Gene3D - 191 421 IPR015943 GO:0005515
Lal12g1479 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 142 - -
Lal12g1479 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Lal12g1479 513 SUPERFAMILY WD40 repeat-like 62 400 IPR036322 GO:0005515
Lal12g1479 513 SMART WD40_4 101 140 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 355 395 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 143 183 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 49 85 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 269 304 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 309 350 IPR001680 GO:0005515
Lal12g1479 513 SMART WD40_4 213 253 IPR001680 GO:0005515
Lal12g1479 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 192 IPR001680 GO:0005515
Lal12g1479 513 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 9 511 - -
Lal12g1479 513 PANTHER BNAA06G31940D PROTEIN 9 511 - -
Lal12g1479 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 185 - -
Lal12g1479 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 395 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1479 Lal-Chr12 18016758 18021932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1479 111 314 U-box Gene Family AT1G04510 27.434 1.68e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1479 K11790 - gmx:100775857 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1479 12 18016758 18021932 Lal12g1479 12 18016758 18021932 ECH