Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1464 ATGGGAAGACCACCTTGTTGTGACAAATCCAATGTTAAAAGAGGTCTATGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTTTCCAATCACGGAACTGGTAATTGGACATTAGTTCCGAAGAAAGCAGGACTGAACCGATGCGGTAAGAGCTGTAGACTTAGATGGACCAACTACCTAAGACCTGATCTCAAGCATGATGGCTTCACTCCTCAAGAAGAAATGCTCATTATTAACCTTCATGCAGCTATAGGAAGCAGATGGTCTTTAATTGCGAGACGATTACCCGGGAGAACCGACAATGATGTGAAGAACTACTGGAACACGAAACTAAGGAAAAAGCTTATGAAAATGGGAATTGATCCAGTAACACATAAGCCAGTTTCACAAGTCCTCTCTGATTTAGGAAGCATTAGTACATTCCCTAACACCAATAATAACCAAATGAGTTTTGTGAACAATGACTTAATGAAAAACATGTTACCAACAAGAACTGAACCATATGGATCTCAATACTCATCAATAACAACCAATGCAAGTGCTAAAAAGAACACAAAAGTGGATCAAATTCACTCATTGGAACATCAGTACCATGTTTTTAGTGAAGCTTCATCGTCGAATTCATCGTCGACTTCCTCTAATATCGAGCGATTAAGTTCCACACAGTCCTATTCTTGCCAAAATCCACAGGCACAGATTACAACTCCTTGTTCTTCCTTCGAATGGAGCGAGTTTCTTCACAGCGATCCGTTTATATGGTCGGAGTTTCAGCAGCTGCAACAATGTGACATGCAGATGGTTATGTCACCATTGAAACCCTCAAGTTTAATGCAAAGTGAAGTTGTAATTTCCAACAACAATGGCCAAGTTGGTGCAAGTGAGGGTTCTGTAGCTGTAACTTGTGACCCAAGTATGTCATATCAAATGAAGAAGCAATGTGAAAATCATTCATCTTTTGTGGATGGTATTTTGGATAAGGATAGTGAGATTAGAGAAGCATTCCCTAACATTTTGGATGCTGCTTTTGATTACTAA 1038 0.396 MGRPPCCDKSNVKRGLWTPEEDAKILAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDGFTPQEEMLIINLHAAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISTFPNTNNNQMSFVNNDLMKNMLPTRTEPYGSQYSSITTNASAKKNTKVDQIHSLEHQYHVFSEASSSNSSSTSSNIERLSSTQSYSCQNPQAQITTPCSSFEWSEFLHSDPFIWSEFQQLQQCDMQMVMSPLKPSSLMQSEVVISNNNGQVGASEGSVAVTCDPSMSYQMKKQCENHSSFVDGILDKDSEIREAFPNILDAAFDY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1464 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g1464 345 Pfam Myb-like DNA-binding domain 70 110 IPR001005 -
Lal12g1464 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal12g1464 345 SMART sant 66 114 IPR001005 -
Lal12g1464 345 SMART sant 13 63 IPR001005 -
Lal12g1464 345 CDD SANT 17 61 IPR001005 -
Lal12g1464 345 CDD SANT 70 112 IPR001005 -
Lal12g1464 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal12g1464 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g1464 345 PANTHER F14D16.11-RELATED 1 345 - -
Lal12g1464 345 Gene3D - 68 131 - -
Lal12g1464 345 PANTHER F14D16.11-RELATED 1 345 - -
Lal12g1464 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g1464 345 Gene3D - 7 67 - -
Lal12g1464 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1464 Lal-Chr12 17873889 17875637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1464 1 345 MYB Transcription Factor Family AT3G28470 48.588 2.18e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g1464 Myb_DNA-binding 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1464 K09422 - gmx:100815077 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1464 12 17873889 17875637 Lal12g1464 12 17873889 17875637 ECH