Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1462 ATGGCAAACCAACCTGAATCTTCAGATTCTAAGAAAAAGGATTTCAGCACTGCGATCTTGGAGCGTAAGAAAGCGCCGAATCGTCTCGTCGTCGATGAAGCTATTAACGATGATAACTCCGTCGTCGCACTTCACCCTGAAACTATGGAGAAGCTTCAGCTCTTTCGCGGTGATACTATTTTGATTAAGTTTGAATTTGTTCTCTGCTTGAATATTGGAAATGCTTGTTGGGGAAAGAAAAGGAAAGATACAGTCTGTATTGCACTTGCTGATGACACTTGTGAGGAGCCAAAGATAAGAATGAACAAGGTTGTGAGAAACAACCTTAGGGTCAGGCTGGGAGATGTTGTCTCCGTTCATCAATGTCCTGATGTCAAATATGGAAAGCAAGTTCACATTCTTCCTGTTGATGACACTATTGAAGGGGTTACTGGGAATCTGTTTGATGCCTACCTAAAACCATATTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACTTTTTCCTTGTAAGAGGAGGGATGAGAAGTGTAGAATTCAAGGTTATTGAGACTGACCCTGGTGAGTTTTGTGTTGTTGCTCCTGACACTGAGATCTACTGTGAAGGAGAGCCTATTAAGAGGGAAGATGAAAATCGATTAGATGAGATTGGTTATGATGATGTTGGTGGTGTAAGAAAGCAGATGGCGCAGATTCGGGAGCTGGTTGAACTGCCATTGAGGCATCCACAATTGTTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTCTATGGACCACCTGGGTCCGGTAAGACTTTAATTGCCCGTGCAGTTGCAAATGAAACCGGTGCCTTCTTTTTCTGCATCAATGGCCCTGAAATCATGTCAAAACTGGCTGGTGAAAGTGAAAGCAATTTAAGGAAAGCATTTGAGGAAGCTGAGAAGAATGCACCTTCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCAAAACGGGAGAAGACTCATGGTGAAGTTGAGAGGAGAATTGTTTCTCAGCTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCACATGTTATTGTTATGGGAGCTACAAATCGTCCCAATAGCATTGATCCTGCTCTTAGGAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAGGTTCTTCGGATCCATACAAAGAATATGAAGCTTTCTGAAGAAGTTGATCTAGAAAAGATTTCCAAGAACACCCATGGCTATGTTGGTGCTGATTTAGCTGCTTTATGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGACGTAATTGATTTGGAAGATGATACCATTGATGCTGAGATACTGAACTCAATGGCGGTAACAAATGAGCATTTCCAGACTGCTCTTGGGTCAAGTAATCCTTCTGCTCTCCGAGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAAAAGTTTGGAATGTCACCATCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTCTGGCAAAAGCTATTGCCAACGAATGTCAGGCAAACTTCATCAGTATCAAAGGTCCCGAGCTACTTACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCTATTGCTACTCAGAGAGGCAGTAGCACAGGAGATGCTGGTGGTGCTGCTGATCGGGTTTTGAACCAGCTGCTTACGGAAATGGATGGGATGTCAGCAAAGAAAACTGTGTTCATCATTGGGGCCACTAATCGGCCAGACATCATTGATCCTGCTCTTCTGCGACCAGGCCGTCTAGACCAATTGATTTATATACCCCTTCCGGACGAGGAGTCCCGCTTTCAGATCTTCAAATCTTGCTTGAGAAAATCCCCCATCGCAAAAGATGTTGATCTTAGAGCTCTGGCTAAGTATACTCAAGGCTTCAGCGGTGCTGATATTACTGAGATTTGCCAGCGTGCGTGCAAGTATGCTATAAGAGAGAACATTGAGAAGGATATCGAAAAGGAAAGGAGGAGAAGTGATAACCCTGAGGCCATGGAAGAGGATATCGAAGATGAAGATGTTGCAGAAATCAAGGCAGCTCATTTTGAAGAATCAATGAAGTTTGCAAGGAGGAGTGTGAGCGATGCCGACATTCGCAAGTATCAGGCATTTGCTCAGACATTGCAGCAGTCCAGAGGGTTTGGATCTGAGTTCAGGTTTGCAGATAATGCCAGCTCTGGTGCTGCTACTGCTCCTGCTGCATCTGACCCCTTTGCAAGTGCTGATGGGGCTGATGATGATGACCTTTATAGTTAG 2469 0.4415 MANQPESSDSKKKDFSTAILERKKAPNRLVVDEAINDDNSVVALHPETMEKLQLFRGDTILIKFEFVLCLNIGNACWGKKRKDTVCIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKQVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGEFCVVAPDTEIYCEGEPIKREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEEVDLEKISKNTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFKSCLRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRSDNPEAMEEDIEDEDVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADNASSGAATAPAASDPFASADGADDDDLYS 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1462 822 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 7 794 - -
Lal12g1462 822 SMART CDC48_N_2 28 125 IPR003338 -
Lal12g1462 822 SUPERFAMILY Cdc48 domain 2-like 124 216 IPR029067 -
Lal12g1462 822 Gene3D - 222 386 IPR027417 -
Lal12g1462 822 SUPERFAMILY ADC-like 25 122 IPR009010 -
Lal12g1462 822 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Lal12g1462 822 PANTHER AAA-FAMILY ATPASE 7 794 - -
Lal12g1462 822 Pfam ATPase family associated with various cellular activities (AAA) 530 663 IPR003959 GO:0005524|GO:0016887
Lal12g1462 822 Pfam ATPase family associated with various cellular activities (AAA) 257 386 IPR003959 GO:0005524|GO:0016887
Lal12g1462 822 CDD AAA 496 663 - -
Lal12g1462 822 Gene3D - 388 479 - -
Lal12g1462 822 CDD AAA 223 386 - -
Lal12g1462 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 478 IPR027417 -
Lal12g1462 822 SMART AAA_5 526 665 IPR003593 -
Lal12g1462 822 SMART AAA_5 253 389 IPR003593 -
Lal12g1462 822 Gene3D - 6 124 - -
Lal12g1462 822 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 79 780 IPR005938 GO:0016787
Lal12g1462 822 MobiDBLite consensus disorder prediction 796 822 - -
Lal12g1462 822 Pfam Cell division protein 48 (CDC48), domain 2 144 207 IPR004201 -
Lal12g1462 822 Pfam AAA+ lid domain 410 450 IPR041569 -
Lal12g1462 822 Pfam AAA+ lid domain 685 725 IPR041569 -
Lal12g1462 822 Pfam Cell division protein 48 (CDC48), N-terminal domain 28 123 IPR003338 -
Lal12g1462 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 777 IPR027417 -
Lal12g1462 822 SMART CDC48_2_2 142 208 IPR004201 -
Lal12g1462 822 Gene3D - 125 221 - -
Lal12g1462 822 Gene3D - 480 663 IPR027417 -
Lal12g1462 822 Gene3D - 667 776 - -
Lal12g1462 822 ProSitePatterns AAA-protein family signature. 633 651 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1462 Lal-Chr12 17853016 17858097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1462 459 790 Calmodulin-binding Proteins AT3G56690 42.470 3.11e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1462 K13525 - gmx:100791603 1457.97