Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1452 ATGGGGAAAATGATGGTTGTTTTCGTCGTCTTGGTCGCTTTCGCCGTTGTTATTCCATGCCTTGAAGCAGGAATTGCTGAGTTTGATGATTATCTTAAAGCTCAAGCTGAGGCAGCCAAAAAACTTGCTCTTGAGACTTATGTGCCAAACCCTGAAGAAATTACTGAAGACCTAAATCTGCATGTTCATAAGGCAATGGAAGAGTATGAGATGGAATTGACAAACAGCACAACAAGAAGGGTACTAAGGCAAGGGAAAAGAGCTAGAGGACCATGCGAAGCCACAAATCCCATTGACAGATGCTGGAGGTGCAGAAGAAACTGGGCCAATGACCGTTTCAGGTTAGCCAAATGTAGCAAAGGGTTCGGGCGGAGAGCCACGGGAGGACTTGGTGGTCCAATCTATGTGGTCACTGATTCATCAGATAGAGACTTGGTTAACCCTACTCCAGGAACACTCCGTTATGCTGTCACAAGAAAGGGTCCATTATGGATCATATTCAAGACTAGTATGGTTATTACATTGCAACAAGAATTGATGATTTCTTCAGATAAAACCATTGATGGTCGTGGTGCTAATGTTCAAATTAAGGGTGGTGCTGGACTCACATTGCAGTTTGTGAACAATGTTATTGTTCATAATCTTAGGATTAGTAAGATTGTTGCTAAGAGTGGTGGCATGATAAGAGATTCTTTTGATCATTATGGATTTAGAACAAGGAGTGATGGTGATGCTGTCTCTATTTATCAATCCTCAAACATTTGGATTGATCATCTTTCATTGTCCCAAAGTGATGATGGTCTTGTTGATGTTATCCAAGGTTCCACTGGTATCACTATCTCAAATTGCCACATGACCAAGCATAACGATGTTATGCTATTAGGAGCAAGTGATAGTTTCAGTGGTGACAAGATCATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGGATGCCAAGAGTAAGATGGGGTTTTGTCCATGTTGTGAACAATGACTACACTCATTGGATAATGTATGCAATAGGTGGTAGTTCAGGTCCAACAGTTTTGAGCCAAGGAAATAGATTCATAGCACCAAACAATGACGCTGCAAAGGAAATCACACATAGAGATTATGCAGCACCAAATGTGTGGAAGAATTGGCAATGGACTTCAGTGCAAGATCATTTCATGAATGGTGCTAAGTTTATAGAATCTGGTCAACATGTTACAAATCTTCCATACAAAAAACAATTCATAATGAAACCAAGACATGGAATTTATGCTAATAGGTTAACTAGATGGACTGGTGCACTTCCTTGTATTGCAGGTTTACCTTGCTAG 1338 0.4058 MGKMMVVFVVLVAFAVVIPCLEAGIAEFDDYLKAQAEAAKKLALETYVPNPEEITEDLNLHVHKAMEEYEMELTNSTTRRVLRQGKRARGPCEATNPIDRCWRCRRNWANDRFRLAKCSKGFGRRATGGLGGPIYVVTDSSDRDLVNPTPGTLRYAVTRKGPLWIIFKTSMVITLQQELMISSDKTIDGRGANVQIKGGAGLTLQFVNNVIVHNLRISKIVAKSGGMIRDSFDHYGFRTRSDGDAVSIYQSSNIWIDHLSLSQSDDGLVDVIQGSTGITISNCHMTKHNDVMLLGASDSFSGDKIMQVTVAFNHFGQGLIQRMPRVRWGFVHVVNNDYTHWIMYAIGGSSGPTVLSQGNRFIAPNNDAAKEITHRDYAAPNVWKNWQWTSVQDHFMNGAKFIESGQHVTNLPYKKQFIMKPRHGIYANRLTRWTGALPCIAGLPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1452 445 PANTHER PECTATE LYASE 5 445 - -
Lal12g1452 445 Pfam Pectate lyase 178 361 IPR002022 -
Lal12g1452 445 PANTHER PECTATE LYASE 18-RELATED 5 445 IPR045032 GO:0030570
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Lal12g1452 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Lal12g1452 445 SMART amb_all 170 367 IPR002022 -
Lal12g1452 445 Pfam Pectate lyase, N terminus 25 79 IPR007524 GO:0030570
Lal12g1452 445 Gene3D - 95 438 IPR012334 -
Lal12g1452 445 SUPERFAMILY Pectin lyase-like 86 417 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1452 Lal-Chr12 17767855 17770227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1452 1 445 Polysaccharide Lyase AT5G15110 52.000 3.98e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1452 K01728 - gmx:100810615 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1452 12 17767855 17770227 Lal14g1922 14 18499005 18500855 ECH
Lal12g1452 12 17767855 17770227 Lal12g1452 12 17767855 17770227 ECH
Lal6g0867 6 5898245 5900861 Lal12g1452 12 17767855 17770227 ECH