Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1451 ATGGCGGAAGGCCATCAATTTAACAACATCACCCTTGGTGGCCGCGGCGGCACCTTATACCATTGCCATGCAAGTTCAAAGGGATTTTTGTTCCAAATTTTCTGCCCTACTCAACATGAACGATTTGTTTTGGTGCTGTGTACAAATACAGGGCAGATGAAAATTTATTCAGAAGGCATTTTATGGAGGAGACAAGGGGGTGGCAAATTGATTGAAGTTGATAAATCTGACATAATGGGTGTAACATGGATGAAGGTTCCAAGGACCAATCAACTTGGTGTTCAGATTAAAGACGGGTTGTTCTACAAGTTCACCGGATTCCGTGATCAGGACGTTGCAAGTTTGACAACTTTTTTCCAAAATACCTTCGGAATAATAGTAGAGGAGAAGCAGCTTTCTGTTACTGGGCGTAACTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTCTAGCAGATGTTGCTCAAACACAGCTTCAAGGGAAAAATGATGTGATTTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGGTTTTCCGTGACCAAATCATGTCTAGGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTCGTTACATTTGAGGGTATTGCAATCCTTACCCCAAGGGGACGATACAGTGTTGAATTACATTTGTCTTTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATACAATACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTTGTTATTATCAGTCTTGACCCCCCAATTCGGAAAGGGCAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTTAGTTGTGCAAAGCGAATTGTCAATGGGTGAAGACCTTTATAATTCCAAGTACAAGGACAAGTTGGACATGTCTTATAAGGGACTTATCCATGAAGTCTTCACTACAATATTGCGGGGATTATCTGGTGCTAAAGTTACCAAACCTGGAAAATTTAGGAGTTGCCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGTTTTTTCTTTCTACCTAAACCCCCCACCCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTACTTTGACCTTCTGGTCAGACTAAAATCTGAGACAGAACATCTCTTCCGTAATATCCAGAGAAATGAATACCACAATTTATATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTGGGAGATGCCCAGGCTCCTGGTGGTATGGCTAAGGTTCTTGAGACTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATTAAAAATGAAGCTGGTGGTGGAGATGAGAGTGATGAGGAGGACGAAGATTTTGTTCTTGATAAGGATGATGGAGGTTCTCCAACTGATGATTCTGGAGGAGACGATTCTGATGGCAGTAAAAGTGGTAGTGATGATGAGAAAGAGGCAAGTTTCTATTTGCCCAAGCCTACTAAAAAGGAACCAAAGAAGGATCTCTCTTCTAAGGCATCTACTTCTAAGAGGAAACCAAAAGACGCAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCATTGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAAGAGAAGGAACCATACGAAGCAAAAGCCCGTGCAGATAAAATACGTTACAAGGATGAGATTAGTGGTTACAACAAGAATCCACAACCCATGAATGTTGATTCGGGAAATGAATCCGACAGTTCGTAA 1962 0.4108 MAEGHQFNNITLGGRGGTLYHCHASSKGFLFQIFCPTQHERFVLVLCTNTGQMKIYSEGILWRRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLFYKFTGFRDQDVASLTTFFQNTFGIIVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVAQTQLQGKNDVILEFHVDDTTGANEVFRDQIMSRADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVVQSELSMGEDLYNSKYKDKLDMSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLVRLKSETEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQAPGGMAKVLETDDDDAVDPHLERIKNEAGGGDESDEEDEDFVLDKDDGGSPTDDSGGDDSDGSKSGSDDEKEASFYLPKPTKKEPKKDLSSKASTSKRKPKDADEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKIRYKDEISGYNKNPQPMNVDSGNESDSS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1451 653 Gene3D High mobility group box domain 551 650 IPR036910 -
Lal12g1451 653 Gene3D - 341 449 IPR011993 -
Lal12g1451 653 MobiDBLite consensus disorder prediction 629 653 - -
Lal12g1451 653 Gene3D - 126 209 IPR038167 -
Lal12g1451 653 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 568 636 IPR009071 -
Lal12g1451 653 MobiDBLite consensus disorder prediction 492 559 - -
Lal12g1451 653 Pfam POB3-like N-terminal PH domain 48 128 IPR035417 -
Lal12g1451 653 CDD PH2_SSRP1-like 344 443 - -
Lal12g1451 653 Pfam HMG (high mobility group) box 568 636 IPR009071 -
Lal12g1451 653 CDD PH1_SSRP1-like 209 342 - -
Lal12g1451 653 Pfam Structure-specific recognition protein (SSRP1) 136 198 IPR024954 -
Lal12g1451 653 MobiDBLite consensus disorder prediction 472 574 - -
Lal12g1451 653 SMART hmgende2 567 637 IPR009071 -
Lal12g1451 653 Gene3D - 210 339 - -
Lal12g1451 653 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 48 192 - -
Lal12g1451 653 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 191 651 - -
Lal12g1451 653 CDD HMGB-UBF_HMG-box 568 633 - -
Lal12g1451 653 Pfam Histone chaperone Rttp106-like 352 441 IPR013719 -
Lal12g1451 653 SUPERFAMILY HMG-box 559 643 IPR036910 -
Lal12g1451 653 Gene3D - 35 123 IPR011993 -
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 221 237 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 243 259 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 266 282 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 331 344 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 358 376 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 376 393 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 402 418 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 PRINTS Structure-specific recognition protein signature 418 436 IPR000969 GO:0003677|GO:0005634
Lal12g1451 653 SMART Rtt106_2 350 443 IPR013719 -
Lal12g1451 653 PANTHER FACT COMPLEX SUBUNIT SSRP1 191 651 - -
Lal12g1451 653 PANTHER FACT COMPLEX SUBUNIT SSRP1 48 192 - -
Lal12g1451 653 MobiDBLite consensus disorder prediction 636 653 - -
Lal12g1451 653 SUPERFAMILY PH domain-like 208 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1451 Lal-Chr12 17760083 17766180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1451 564 635 ARID Transcription Factor Family AT1G04880 40.278 1.35e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal12g1451 Rtt106 2e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1451 K09272 - gmx:100805034 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1451 12 17760083 17766180 Lal12g1451 12 17760083 17766180 ECH