Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1449 ATGGCTTTTCCAAATTCTCACCCTTTCATGTTTCAAACAAATCATGAATATCATCATGACCAGCTTCGTTCAACTCCAAATCTCAACAACTCCATCCTCTCTTTCCCACCACATCACTTTCACCAAGGAGGTGGTGCAGCTTTCATGATGAAGAGATCAATGTCATTTTCAGGCATAGAGAACAAGCAATGTGATGCAGTGCATGGAGATGATGAGTTATCAGATGATGGATCTCATGTTGAGGAGAAGAAAAGGAGGCTCAACTTGGAACAAGTGAAGGAACTTGAGAAGAGTTTTGAGATAAGGAACAAGCTTGAACCTGAAAGGAAAATGCAACTTTCTAAGGCTTTAGGGCTTCAACAAAGACAAGTTGCAATATGGTTTCAAAACAGAAGAGCAAGATGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTGCTCAAGAAGCACTTTGAAGCTCTTAAGAGTGATAATGATAACCTTAAGGCTCAGAACCAGAAACTACATAGAGAGTTACAAGCTATGAAAAGTAGGGTTTGCTTTGAAAGTAGCACAATTAGCCTGAAGAAAGAAAGTGATCAGATTTCATGGAGCAATAATGGAAGTGATATTAGTAATTCAAATATCAATTTAGATCTATCAACAAAACCAGTAATGAACAATCCTATATCTTCTGAGAATGGTAATTCCATAAAGTCTATAGCCATAACTCAGCTTCTCCAATGTTCATCAAGATCAAATGTTGAAGAAGAAAGCTTCACCAACATGTTTCATAACATTGAGGATCAGCAGAATTTTTGGCCTTGGCCTGAGCATAACCATTTTAATTGA 831 0.373 MAFPNSHPFMFQTNHEYHHDQLRSTPNLNNSILSFPPHHFHQGGGAAFMMKRSMSFSGIENKQCDAVHGDDELSDDGSHVEEKKRRLNLEQVKELEKSFEIRNKLEPERKMQLSKALGLQQRQVAIWFQNRRARWKTKQLEKEYEVLKKHFEALKSDNDNLKAQNQKLHRELQAMKSRVCFESSTISLKKESDQISWSNNGSDISNSNINLDLSTKPVMNNPISSENGNSIKSIAITQLLQCSSRSNVEEESFTNMFHNIEDQQNFWPWPEHNHFN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1449 276 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Lal12g1449 276 SMART HOX_1 81 142 IPR001356 GO:0003677
Lal12g1449 276 SUPERFAMILY Homeodomain-like 72 140 IPR009057 -
Lal12g1449 276 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Lal12g1449 276 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Lal12g1449 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 274 IPR045224 GO:0003700
Lal12g1449 276 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Lal12g1449 276 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 274 - -
Lal12g1449 276 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Lal12g1449 276 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Lal12g1449 276 CDD homeodomain 83 139 IPR001356 GO:0003677
Lal12g1449 276 Coils Coil 130 178 - -
Lal12g1449 276 Gene3D - 75 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1449 Lal-Chr12 17733946 17737719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1449 1 271 Homeobox Transcription Factor Family AT5G15150 48.973 3.52e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal12g1449 Homeodomain 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1449 K09338 - gmx:100790803 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1449 12 17733946 17737719 Lal12g1449 12 17733946 17737719 ECH
Lal12g1449 12 17733946 17737719 Lal6g0857 6 5810925 5813052 PCT
Lal6g0857 6 5810925 5813052 Lal12g1449 12 17733946 17737719 PCT