Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1447 ATGTCTAGCAGAAGGTCCAGGCAACAATCATCAGGGTCAACTAGAATCTCTGATGACCAAATCATCGATCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCATCATAGGCGTTCTGACAAGGTATCAGCATCTAAGGTCCTACAAGAAACTTGCAACTACATAAGAAACTTACACAGAGAGGTTGATGACTTAAGTGAAAGACTTTCTCAGTTGTTGAACACTATTGATTCTGATAGTGCTGAAGCTGCTATTATTAGGAGCCTAATTAGCCAATAA 282 0.3972 MSSRRSRQQSSGSTRISDDQIIDLVSKLRQLVPEIHHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLNTIDSDSAEAAIIRSLISQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1447 93 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Lal12g1447 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lal12g1447 93 Coils Coil 56 83 - -
Lal12g1447 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lal12g1447 93 Gene3D - 1 88 IPR036638 GO:0046983
Lal12g1447 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lal12g1447 93 CDD bHLH_AtPRE_like 15 76 - -
Lal12g1447 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1447 Lal-Chr12 17711612 17713767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1447 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 1.95e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g1447 HLH 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1447 - - csv:101221024 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1447 12 17711612 17713767 Lal14g1919 14 18474373 18475557 ECH
Lal12g1447 12 17711612 17713767 Lal12g1447 12 17711612 17713767 ECH
Lal6g0855 6 5793642 5795462 Lal12g1447 12 17711612 17713767 ECH
Lal22g0769 22 5526317 5529125 Lal12g1447 12 17711612 17713767 ECH
Lal12g1447 12 17711612 17713767 Lal24g1387 24 15272036 15273985 LSH
Lal12g1447 12 17711612 17713767 Lal6g0855 6 5793642 5795462 PCT
Lal6g0855 6 5793642 5795462 Lal12g1447 12 17711612 17713767 PCT