Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1443 ATGGGAAGACTACCATGTTGTGATAAAGTTGTGAAAAAAGGACCTTGGACTCCTGAAGAAGATATCATATTGGTGTCTTATATACAGGAACATGGTCCTGGAAATTGGAGGGCTGTTCCTACCAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTACCTAAAACCAGGAATCAAGAGGGGTAACTTTACAAAACAAGAGGAAAAAATGATAATCCACCTTCAAGCTCTTTTAGGAAACAGATGGGCTGCTATAGCTTCATACCTTCCACAAAGAACGGACAATGATATCAAGAACTATTGGAACACCTACTTGAAAAAGAGGCTTGAGAAATTCGAATCTCGATCTGAAGGAAACTTAGGGCATGTGTATAACTCAGCTTCAAAGCCAATAACTAGAGGCCAATGGGAAAGAAGGCTCCAAACTGATATCAACATGGCCAAAAAAGCTCTCACTGAAGCTCTTTCACCAAAGAAGATACTTTCATTACATGAACCAAATGATAATAGCATTTCTAATTATGATATTGGATCCATAAAACCAACTAGCCCTAATTCTTTATGCTATGCTTCAAATGCTGATAACATTGCTCGTTTGCTAAAGGGGTGGATGAAGAATCATTCACCAAATAAGGCCTCATCAAAACCTAACTCAATATTGAGTACTCAAAATTCCTTCAATAACTTGGCAGGATTTGACACTGCTTCTAGTGAAGGAACACCACCAAGTGGTGGAGCAAAAGGAAGTGTTGAATTGTGTGAGACTTTTGAGTCTTTGTTTGGTTATGAATCTTTGGACTATTCCTCAAATTCTGAATTTTCTCAATCTTTGTCACATGAAGCTAGTACTGTTTGCCAAGATGAGAGCAAGCCTGGTACTACAAATAGTATTGCAGAAATGCCATTCTCTTTGCTTGAGAAATGGCTTCTAGATGATACTAAAATTGGTGCAGATGCCACTTTGCTTTAG 987 0.385 MGRLPCCDKVVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYLKPGIKRGNFTKQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRLEKFESRSEGNLGHVYNSASKPITRGQWERRLQTDINMAKKALTEALSPKKILSLHEPNDNSISNYDIGSIKPTSPNSLCYASNADNIARLLKGWMKNHSPNKASSKPNSILSTQNSFNNLAGFDTASSEGTPPSGGAKGSVELCETFESLFGYESLDYSSNSEFSQSLSHEASTVCQDESKPGTTNSIAEMPFSLLEKWLLDDTKIGADATLL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1443 328 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lal12g1443 328 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lal12g1443 328 SMART sant 12 62 IPR001005 -
Lal12g1443 328 SMART sant 65 113 IPR001005 -
Lal12g1443 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lal12g1443 328 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Lal12g1443 328 Gene3D - 12 65 - -
Lal12g1443 328 CDD SANT 68 111 IPR001005 -
Lal12g1443 328 CDD SANT 15 60 IPR001005 -
Lal12g1443 328 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lal12g1443 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lal12g1443 328 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 321 - -
Lal12g1443 328 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lal12g1443 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 321 - -
Lal12g1443 328 Gene3D - 68 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1443 Lal-Chr12 17656402 17658156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1443 1 318 MYB Transcription Factor Family AT5G62470 49.307 4.62e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g1443 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1443 K09422 - gmx:780542 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1443 12 17656402 17658156 Lal13g1819 13 17663787 17665776 LSH
Lal12g1443 12 17656402 17658156 Lal24g1384 24 15219766 15221230 LSH