Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1442 ATGGGGAGACTTTATAATCTTAGTACTTTTAAGGAGGGTCTTGTTTGTAACTTTGGGACTTGGGTGAGAGGTAATTGGGAGTGGAAGTTCACTTGGCGTCGTCCTTTATTTACTTGGGAGAAGGATTTAACCATTTCTTTTTTGCAAGATCTTATCCAACTGAAGTTTCATATCAACAAGTCAGATACTTGGGATTGGATTCATGACAAATCCAAGCTTTACTCCGTCAAATCCGCCTACAGACATATCACTCATTCCGATCAACTTCACATTCTCACCGACATTAATCATTGTGTCATTTGGAAGTCAAAAGCTCCTCTAAAGGTCCTTTCTTTTGCTTGGAGGCTCTTCCAAGATAGAATTCCAACTTTGGACGCTCTTGTCAAGCGGGGTGTCTCTTTGATTAATAACAGTACTTCTAATTGTGTTTTCTGCAATTCTCATCAAGAATACAATCGGAAATCTTGGAAGCTTTGGAGTATTATCTGGTTTGCTACTATTTGGGCCCTTTGGCTTGGGAGGAATGACATTGTGTTCAACAATGCTAAACCATATTTACAAAATATCTTGAATTCTTCTAAGGGTTTTGAAGAATTTGGAAACATGAGGAGGCGCCAAGTTATAGTTAGAAGATCAGAGGAACAACCTGCAAGAAGTGTTAGGAGTGTGAAATATGGAGAGTGCCAAAAGAATCATGCTGCTAATGTTGGAGGATATGCTGTAGATGGTTGTAGAGAGTTCATGGCAAGTGGTGATGAAGGTACAATTTCTGCTCTAACTTGTGCTGCTTGTGGCTGCCACAGAAACTTCCACAAAAAAGAGGTTGAGATTGAAGCACTGAGTGATTTCTCTTCACAAACCTCTTCAGGGACTTGA 876 0.3995 MGRLYNLSTFKEGLVCNFGTWVRGNWEWKFTWRRPLFTWEKDLTISFLQDLIQLKFHINKSDTWDWIHDKSKLYSVKSAYRHITHSDQLHILTDINHCVIWKSKAPLKVLSFAWRLFQDRIPTLDALVKRGVSLINNSTSNCVFCNSHQEYNRKSWKLWSIIWFATIWALWLGRNDIVFNNAKPYLQNILNSSKGFEEFGNMRRRQVIVRRSEEQPARSVRSVKYGECQKNHAANVGGYAVDGCREFMASGDEGTISALTCAACGCHRNFHKKEVEIEALSDFSSQTSSGT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1442 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 225 274 IPR006456 -
Lal12g1442 291 PANTHER BNAA09G44460D PROTEIN 210 285 - -
Lal12g1442 291 Pfam ZF-HD protein dimerisation region 223 275 IPR006456 -
Lal12g1442 291 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 224 275 IPR006456 -
Lal12g1442 291 Pfam zinc-binding in reverse transcriptase 74 150 IPR026960 -
Lal12g1442 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 210 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1442 Lal-Chr12 17637078 17638839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1442 202 290 Zinc finger-homeobox gene family AT3G28917 59.596 5.85e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal12g1442 zf-RVT 4.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1442 - - lang:109339447 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1442 12 17637078 17638839 Lal12g1442 12 17637078 17638839 ECH