Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1441 ATGGACAGAAATACCCCTACACCAGCGAAACCGGTGGAGCCTGAATCCGACACACCAACCCGGATCCAACAACCAATTAACAACACCGCCGCGGCGGTTAATATTAAACCTTTGTCTTTTTCAAACGGTGTTTTGAAGCGGCACCACCACCCTCACCATCAGAGCAATATTGTTAGCCCCACCGCCACCGTGGCTGTGACGGCGGTTACTTATAAAGAATGCTTGAAGAATCATGCAGCTAGCTTAGGCGGCCACGCGGTCGATGGTTGCGGCGAGTTCATGACGTCGCCCAACGTCACCACCGGTGACCCTAGCTCAATAAAATGCGCCGCATGTGGTTGCCACCGTAACTTCCACCGTCGTGACCCAGAAGAACCACCGATTCCCACCACCACAACCCATGTCATAGAATACCAACCACACCATCGTCACCACCCTCCTCCTCCTCCACCACCACCACAACCTTCCCGGAGCCCAAACTCCGTTTCGCCACCTCCAATCTCATCCTCTTACTACCCATCAGCACCCCACATGCTCCTCGCTCTTTCCGGTGGTCTTTCAGTCCCGCCGGAGTCCACAGCCGCGCCGGCGAATCATGCAGCTGTAGCAGCTGCCATGGCTGCTGCTGTTGCTGCTTCATCTCCTCGGAAACGTTTTCGAACGAAGTTCAGTCAAGAACAGAAGGAGAAGATGCAGGAATTTGCAGAACGTGTTGGGTGGAAGATGCAGAAAAGAGATGAAGATTTGGTTATGGAGTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTTTGGATGCATAACAATAAGAACACTTTTGGGAAAAAAGATGTTATTGGTGTTACTACTAATACAACAAACGGTGTCGTTTTGGAACATCTTCACAACAATGTTAATGATAGTGTTAGTGGTGGTAATCAAGATCATAATAATAATATTAATCATAGTAGTGGTGCTAATGGGTCTTCTTCTTCTTAA 984 0.4878 MDRNTPTPAKPVEPESDTPTRIQQPINNTAAAVNIKPLSFSNGVLKRHHHPHHQSNIVSPTATVAVTAVTYKECLKNHAASLGGHAVDGCGEFMTSPNVTTGDPSSIKCAACGCHRNFHRRDPEEPPIPTTTTHVIEYQPHHRHHPPPPPPPPQPSRSPNSVSPPPISSSYYPSAPHMLLALSGGLSVPPESTAAPANHAAVAAAMAAAVAASSPRKRFRTKFSQEQKEKMQEFAERVGWKMQKRDEDLVMEFCNEVGVDRSVLKVWMHNNKNTFGKKDVIGVTTNTTNGVVLEHLHNNVNDSVSGGNQDHNNNINHSSGANGSSSS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1441 327 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 216 273 IPR006455 -
Lal12g1441 327 MobiDBLite consensus disorder prediction 299 327 - -
Lal12g1441 327 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Lal12g1441 327 MobiDBLite consensus disorder prediction 139 169 - -
Lal12g1441 327 SUPERFAMILY Homeodomain-like 211 277 IPR009057 -
Lal12g1441 327 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 297 - -
Lal12g1441 327 MobiDBLite consensus disorder prediction 145 162 - -
Lal12g1441 327 MobiDBLite consensus disorder prediction 1 22 - -
Lal12g1441 327 Gene3D - 203 276 - -
Lal12g1441 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Lal12g1441 327 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Lal12g1441 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1441 Lal-Chr12 17618315 17619298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1441 7 309 ZF-HD Transcription Factor Family AT3G28920 48.910 8.40e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal12g1441 ZF-HD_dimer 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1441 - - gmx:100786999 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1441 12 17618315 17619298 Lal24g1376 24 15067582 15068550 LSH