Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1439 ATGATGGAATTGGATCCTATGGATTTGCTTCGATCAAATCTTTCTCGAGTTCGGATTCCTGAACCCACCAATCGCATCTACAAGCAAGAATGCTGCATATCTTTCCAAACTCCTAGGTCTGAAGGTGGATTATTCATAGACATGTTCAATTTCCTTGCTTTTGGGAAGGAATGTGTTGCTTGGAATTTTGAGAAAACTGGTAATCCTGTGTATTTGCATATAAAGCAGACTAAAAAGATTGTACCAGAAGACAGGCCTTCAAAGAAACCCACTCTTTTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGACACTGAATATGAAGAAGCTCGTAGTATAGTTATTTTGCCTGACTATGTATCTCTCCCATTCCCTTCAGTGGAATTGCCAGAGAAGGTACGGTTGGCTGCTGATGCTATATTACTGGCTGAGGGTGCTGAATGGAAAGAGCAAGTTGCAGCTTGGACTGCTGCAGATACGAAACACGTTAGTGTCTATGCGATGAATTTACAACAGTTTGACAATGGTGTTGTTATTCCTCCATCTGGGTGGAAATGTTCTCAGTGTGACAAGACAGAGAATCTTTGGCTAAATCTGACTGATGGAGTGATCCTTTGTGGGAGGAGAAACTGGGATGGAAGTGGTGGAAACAATCATGCCGTTGAATATTATAAAAAGACAGGCTACCCACTTGCTGTAAAACTCGGGACTATCACTGCTGATATTGAATCAGCAGATGTTTACTCCTACCCAGAGGATGATAGTGTATTGGACCCACTTTTAGCAGAACATCTGGCATTTTTTGGCATTGACTTCTCATCACTTCAAAAGACTGAATTGACGACTGCTGAAAGAGAACTTGATCAAAATACCAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAGGAAGTGGAACCGATTTTTGGACCTGGATATACCGGATTGGTCAATCTTGGAAACAGTTGTTACTTGGCCGCAACTATGCAAGTTGTGTTTTCAACAGGATCCTTCTCTTCAAGGTACTATATAAACCAAAATTTAAAGAAAGCGTTTGAAGCTGCTCCTGCTGATCCAACTGTGGACCTGAATATGCAGTTGACAAAGCTGGCTCATGGTCTTCTGTCTGGTAAATATTCTACTCCAGCTTCTCAGAGTGACGAAAATGCAAATGTTGCTTCTTCAACTATGACTGATAAACAAGAAGGGATACCCCCACGTATGTTTAAAGCTGTAATTGCTGCTAGCCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTATTGACCAAGTTGAACGAGCTAATAGTGGGAAAACTGGACTGGATCCTTCGAGGAGTTTCAAGTTTGGTATTGAAGATCGAATTTTGTGTTCCTCTGGAAAAGTTGCATATAATAGAAGGAACGATTACATCCTTTCCCTTAATATCCCATTGCATGAAGCAACCAACAAAGAGGAATTAGAATCCTTTCACAAACTGAAAGCTGAGAAGCTTTCTGAAGGAAAGGAAGTATCCGGTGATGAGATTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTTACAAATTTTGCAGCTCCTGAGGAGATACATGATTTTTACAGCACTACCTTGAAAACAAAGACAACAGCTGTAAAGACGGCTGGTCTGACATCATTCCCTGATTACCTGGTGTTACACATGAGGAAATTTGTTATGGAAGTAGGATGGGTACCCAAAAAGCTTGATGTGTATATAGATGTTCCTGATATTATAGATATTAGTCATATGCGTAGCAAAGGTCATCAACCTGGGGAAGAGATGTTGCCAGATGGAGTGCCTGAGGAAGATTCAGACAAGCCTTGGGTCAATGAAGAAATTGTCTCTCAACTGGTTTCCATGGGCTTTAACCATATTCATTGTCAGAAAGCTGTAATAAATACCTCAAATGCTGGTGTAGAAGAGGCCATGAATTGGTTACTATCCCACATGGATGATCCAGATATTGATGCTCCTATTTCAAAAGGGCAAGGCAATGAGAGTGTTGACCAATCAAAAGTTGATACTCTAATTTCTTTTGGATTTCAAGAAGATGTTGCTCGGAAGGCACTGAAGGCATCGAATGGTGACATTGAGAAAGCAACAGATTGGATATTCAGCAACCCTGATGCAACAGTTTCTAGTATGGATGCTACCTCATCAAGCAATGCATCTGTTCCAAATGGTGATGACTTGCCTGATGGAGGAGGAAAATACCGACTTATTGGAATTGTTAGCCACATCGGAACCTCTACGCAGTGTGGTCACTATGTTGCTCACATCTTGAAAGATGGTAGATGGGTTATTTTTAACGACAACAAGGTTGGGGTATCCATTAATCCTCCAAAGGACATGGGGTATCTTTATTTCTTTGAAAGGATTAGTGGTTGA 2433 0.4094 MMELDPMDLLRSNLSRVRIPEPTNRIYKQECCISFQTPRSEGGLFIDMFNFLAFGKECVAWNFEKTGNPVYLHIKQTKKIVPEDRPSKKPTLLAIGVDGGFDNNDTEYEEARSIVILPDYVSLPFPSVELPEKVRLAADAILLAEGAEWKEQVAAWTAADTKHVSVYAMNLQQFDNGVVIPPSGWKCSQCDKTENLWLNLTDGVILCGRRNWDGSGGNNHAVEYYKKTGYPLAVKLGTITADIESADVYSYPEDDSVLDPLLAEHLAFFGIDFSSLQKTELTTAERELDQNTNFDWNRIQESGQEVEPIFGPGYTGLVNLGNSCYLAATMQVVFSTGSFSSRYYINQNLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSTPASQSDENANVASSTMTDKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFIDQVERANSGKTGLDPSRSFKFGIEDRILCSSGKVAYNRRNDYILSLNIPLHEATNKEELESFHKLKAEKLSEGKEVSGDEIVRPRVPLEACLTNFAAPEEIHDFYSTTLKTKTTAVKTAGLTSFPDYLVLHMRKFVMEVGWVPKKLDVYIDVPDIIDISHMRSKGHQPGEEMLPDGVPEEDSDKPWVNEEIVSQLVSMGFNHIHCQKAVINTSNAGVEEAMNWLLSHMDDPDIDAPISKGQGNESVDQSKVDTLISFGFQEDVARKALKASNGDIEKATDWIFSNPDATVSSMDATSSSNASVPNGDDLPDGGGKYRLIGIVSHIGTSTQCGHYVAHILKDGRWVIFNDNKVGVSINPPKDMGYLYFFERISG 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1439 810 Pfam Ubiquitin carboxyl-terminal hydrolase 315 805 IPR001394 GO:0004843|GO:0016579
Lal12g1439 810 Pfam Variant UBP zinc finger 17 79 IPR041432 -
Lal12g1439 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 809 - -
Lal12g1439 810 ProSiteProfiles Zinc finger UBP-type profile. 163 273 IPR001607 GO:0008270
Lal12g1439 810 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 315 808 IPR028889 -
Lal12g1439 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Lal12g1439 810 MobiDBLite consensus disorder prediction 601 620 - -
Lal12g1439 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Lal12g1439 810 CDD Peptidase_C19B 316 806 - -
Lal12g1439 810 SUPERFAMILY RING/U-box 166 273 - -
Lal12g1439 810 Pfam UBA/TS-N domain 684 719 IPR015940 -
Lal12g1439 810 Pfam UBA/TS-N domain 625 661 IPR015940 -
Lal12g1439 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 809 - -
Lal12g1439 810 CDD UBA2_atUBP14 686 723 - -
Lal12g1439 810 SMART uba_6 625 663 IPR015940 -
Lal12g1439 810 SMART uba_6 684 721 IPR015940 -
Lal12g1439 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 623 664 IPR015940 -
Lal12g1439 810 SUPERFAMILY UBA-like 676 724 IPR009060 GO:0005515
Lal12g1439 810 Gene3D Cysteine proteinases 308 809 - -
Lal12g1439 810 MobiDBLite consensus disorder prediction 381 402 - -
Lal12g1439 810 SMART Zf_UBP_1 186 241 IPR001607 GO:0008270
Lal12g1439 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 115 IPR013083 -
Lal12g1439 810 SUPERFAMILY Cysteine proteinases 311 808 IPR038765 -
Lal12g1439 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 260 IPR013083 -
Lal12g1439 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 316 331 IPR018200 GO:0004843|GO:0006511
Lal12g1439 810 Gene3D - 678 738 - -
Lal12g1439 810 Gene3D - 607 677 - -
Lal12g1439 810 Pfam Zn-finger in ubiquitin-hydrolases and other protein 187 260 IPR001607 GO:0008270
Lal12g1439 810 MobiDBLite consensus disorder prediction 381 403 - -
Lal12g1439 810 PIRSF UBP 7 809 IPR016652 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1439 Lal-Chr12 17587415 17596425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1439 622 671 C2H2 Transcription Factor Family AT1G04850 38.000 8.57e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1439 K11836 - gmx:100805602 1370.14