Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1437 ATGTCAGAAGCAAAAGACCCTGCGATCAAGCTCTTTGGGAAGACAATTCCGGTGCCGGAGATACCTACCGGATCCGGTGACTCTAACAAAGCACCATCTTTATCTTCCGGTGATGTTGTTGATCAGAATCATGCTTCTTCTAGCAACTCTTCTGATAGAGGAGAAGAAGAGCTTGAGATTGAGCAGTGTTCAATCTTCAGTTGTGAATTTGGGGACACAATGGGAGAGAAATCAACGGAGGATAAGAAGGAAGATGTTACCAAATCATCAGAAGAGGTCACCAATTTAGATACGGCCTCAAGATCGGGTGAAGCATCTGTAACTCCCTCCACTGAGAAGGAGGCTACTACATTGGAAACTTCAAGGGCCGAAGAAGAATATGGTGAGAATTCACAAGAAAAGACGCTGAAAAAGCCAGACAAAATATTGCCTTGCCCTCGTTGTAATAGCATGGACACCAAGTTCTGTTACTTCAACAATTACAATGTCAATCAACCACGCCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGGTCCATGAGGAACGTTCCTGTTGGTGCTGGTCGACGGAAAAACAAGAACTCCACCTCTCACTTTCGTCAGATAACTGTTCCCGAAGCAGCACTCCAGAATCCTCAGTCAAATGGTGTTCATTATCCTTCCTTGAAATGTAATGGCACAGTCCTTACATTTGGGTCTGATACACCCTTATGTGAATCTATGGCATCTGCTTTGAACCTTGCTGATAAAACAGTGAACAATTGCTTGAGAAATGGATCCAATGGACCAGAAGAACCAAGAATTCCTGTTCCGTATGCCGGTGAAGAAAAAGGGAACAACAATTCTGATAAATCATCTGTTGCTCCAATAAAGCCATCCGAAGGTTCAACCATCGATAAGTCCCAAGAACAAGTTATGCAGAACTGTCAGGGTTTTCCACCTCAAGTTCCCTACTTAACCGGTTCCCCTTGGCCTTTCCCATGGAATCCGGGTCAATGGAGCTCTCCAGTACCACCACCTTCCTTTTACTCACCAGGATTTACGATGCCGTTCTATCCTGCAGCTGCTTATTGGGGTTGTACGGTGCCGCCGGGTGTGTGGAACATGAACATCCCATGGCTAGCACAACCATCATCACCAAATAGTACAGCTACAGCCACTAACTCTGGTCCTAACTCCCCCGCCTTGGGTAAACATTCAAGGGAAGAAAACATGGTCAAACCAAATGATGCTGCAGACGAGGATGAACATAGTAAAGGAGGAAATAATAAAGAAAAAAGCCTTTGGATTCCGAAAACGTTAAGGATTGATGACCTAGGAGAAGCAGCAAAAAGCTCTATATGGACAACTCTTGGGATTGAAAATGATAAGGCAGACTCATTTTCTAGGAGAGGACTCTTTAAAGCTTTCCCATCAAAGCGTGACGAGAAAAATCATGTAATGCAAAACTCACCGGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAATTAACTTTCATGAGTCCTCATAG 1524 0.4455 MSEAKDPAIKLFGKTIPVPEIPTGSGDSNKAPSLSSGDVVDQNHASSSNSSDRGEEELEIEQCSIFSCEFGDTMGEKSTEDKKEDVTKSSEEVTNLDTASRSGEASVTPSTEKEATTLETSRAEEEYGENSQEKTLKKPDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKNSTSHFRQITVPEAALQNPQSNGVHYPSLKCNGTVLTFGSDTPLCESMASALNLADKTVNNCLRNGSNGPEEPRIPVPYAGEEKGNNNSDKSSVAPIKPSEGSTIDKSQEQVMQNCQGFPPQVPYLTGSPWPFPWNPGQWSSPVPPPSFYSPGFTMPFYPAAAYWGCTVPPGVWNMNIPWLAQPSSPNSTATATNSGPNSPALGKHSREENMVKPNDAADEDEHSKGGNNKEKSLWIPKTLRIDDLGEAAKSSIWTTLGIENDKADSFSRRGLFKAFPSKRDEKNHVMQNSPVLQANPAALSRSINFHESS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1437 507 MobiDBLite consensus disorder prediction 381 404 - -
Lal12g1437 507 Pfam Dof domain, zinc finger 140 197 IPR003851 GO:0003677|GO:0006355
Lal12g1437 507 MobiDBLite consensus disorder prediction 74 91 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 26 49 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 260 304 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 281 304 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 484 507 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 92 116 - -
Lal12g1437 507 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Lal12g1437 507 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Lal12g1437 507 MobiDBLite consensus disorder prediction 117 135 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 476 507 - -
Lal12g1437 507 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 506 - -
Lal12g1437 507 PANTHER CYCLIC DOF FACTOR 2 1 506 IPR045174 GO:0003700|GO:0006355
Lal12g1437 507 MobiDBLite consensus disorder prediction 74 135 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 1 59 - -
Lal12g1437 507 MobiDBLite consensus disorder prediction 381 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1437 Lal-Chr12 17569325 17573124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1437 6 507 C2C2-Dof Transcription Factor Family AT5G39660 43.403 1.53e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal12g1437 zf-Dof 9.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1437 - - aprc:113862693 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1437 12 17569325 17573124 Lal7g1385 7 18889309 18891934 ECH
Lal12g1437 12 17569325 17573124 Lal17g1035 17 8707313 8710972 ECH
Lal12g1437 12 17569325 17573124 Lal12g1437 12 17569325 17573124 ECH
Lal12g1437 12 17569325 17573124 Lal13g1809 13 17584731 17588165 ECH
Lal22g0743 22 5329464 5335579 Lal12g1437 12 17569325 17573124 ECH