Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1433 ATGGGACGATTACCATGTTGTGACAAATTAGGGTTAAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGATGTTGGCGTGCTTTGCCATCAATAGCTGGACTTCAGAGATGTGGCAAGAGCTGCAGATTGAGATGGACCAATTATCTTAGGCCAGACATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACCATTATTCAACTTCATGCTCTCTTAGGAAACAGGTGGTCAGCAATAGCCACACACTTGCCAAAGAGAATAGATAACGAGATTAAGAACTACTGGAACACGCATCTAAAGAAAAGGTTAACGAAAATGGGAATCGATCCGATCACACACAAGCATAAGAATGAAACCCTTCTCTCTAGCGACGGTCAATCCAAAACCGTCGCTAATCTCAGCCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCAAGACTAGTTAGGGAATCAAAACTTCGTTCACACTCCATTCAGAACCAACTTGGATGTTCCACTTTTGCATCTTCATCTTCTGCATCAACCTCAGTTCTTATTGTTAATAGTAATAAACAAGATCCATCATCAACAACATCATCACCAAGGGTTGATGTATTCAAGACTTGGAATAATGGAGGGTGGTTGAAATGTAATGAAGAAGTTAGTAATGGTGTTGAGGACCTTGAATCACCAACCTCTACTTTATCTTTCTCTGAGAATGCACCACCGATTATGGCTATAACTACTACTAGTGGTGGTGGAGTTTTAGGTGAAAATACAATGCCTATGATTGAGTTTGTGGGGTGTTCAGGTTCATCTGTGAAAGAAGAAGGTGAACAAGAGTGGAAAAGTTATGAAAGTTCAACTAATTTGGCAGAATATAAAGATGGCATAATGGAAAATTCAATGACTACTTTCACGTGTGGTTTGCATGAGCTAACAATGTCAATGGAAAATTCAACTCTTAGGACTAATGATCATGCCATTGTTGAACAAGGGTTCACTAGTCTTTTGCTCAATACAAACTCCGGTGATGATCGGAGTTTGTCCGAGGGCGGCGAAGATTCTAATAATCACGATGATAGTGATAATGGTGATGGTTGTGGTGGTGGTGATTTTTATGAAGATAATAAGAACTATTGGAATAACATTCTTAATCTAGCGACTTCTTTGCCTTCTGATTCCCCGATGTTCTAA 1224 0.3987 MGRLPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGCWRALPSIAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRIDNEIKNYWNTHLKKRLTKMGIDPITHKHKNETLLSSDGQSKTVANLSHMAQWESARLEAEARLVRESKLRSHSIQNQLGCSTFASSSSASTSVLIVNSNKQDPSSTTSSPRVDVFKTWNNGGWLKCNEEVSNGVEDLESPTSTLSFSENAPPIMAITTTSGGGVLGENTMPMIEFVGCSGSSVKEEGEQEWKSYESSTNLAEYKDGIMENSMTTFTCGLHELTMSMENSTLRTNDHAIVEQGFTSLLLNTNSGDDRSLSEGGEDSNNHDDSDNGDGCGGGDFYEDNKNYWNNILNLATSLPSDSPMF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1433 407 Gene3D - 11 67 - -
Lal12g1433 407 CDD SANT 69 112 IPR001005 -
Lal12g1433 407 CDD SANT 16 61 IPR001005 -
Lal12g1433 407 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g1433 407 MobiDBLite consensus disorder prediction 350 378 - -
Lal12g1433 407 MobiDBLite consensus disorder prediction 357 375 - -
Lal12g1433 407 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 399 - -
Lal12g1433 407 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g1433 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal12g1433 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal12g1433 407 Gene3D - 69 116 - -
Lal12g1433 407 SMART sant 66 114 IPR001005 -
Lal12g1433 407 SMART sant 13 63 IPR001005 -
Lal12g1433 407 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal12g1433 407 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g1433 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 399 - -
Lal12g1433 407 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1433 Lal-Chr12 17491518 17495357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1433 1 407 MYB Transcription Factor Family AT3G01140 52.278 8.07e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g1433 Myb_DNA-binding 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1433 K09422 - gmx:100101835 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1433 12 17491518 17495357 Lal12g1433 12 17491518 17495357 ECH
Lal12g1433 12 17491518 17495357 Lal24g1369 24 14985505 14988833 LSH