Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1427 ATGGGTTGCATTAACTCTAAGAATGCGGTTGCGAAAGTTTTTTCGCCACCGGTTTTTGGTGATCATCATAGTGTTGCTGGAACAATTGTAGAGAGTGGTTATCATCATCATGGTAATTCTGGTTCAAGGGCTTATTCAGATGAAAAAAAGTTGAAGAAGAATAACTCAAAGAAAAGTAATGGCTCTTTCAGCTTTAGGATTGGATTCTCACATCATAGGTATGTGGATGCAGAACAAAATGCTGCTGGTTGGCCATCTTGGTTAACAGCTTCTGCAGCAGAAGCTATTCAAGGATGGATCCCTCTAAAAGCTGATTCTTTTCAGAAGTTGGAAAAGATTGGACAAGGTACCTATAGCAGTGTGTTCCAAGCACGCGAAGTTGAAAGCGGGAGGATGTTTGCATTGAAGAAGGTGCGGTTCGACAATTTACAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTTCGTAGGCTTGACCACCCAAACATCATGAAATTGGAGGGTATCATTACTTCCAGACTATCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCCGGCCTAGTATCGCGTCCTGACATCACGTTCACCGACTCACAGATAAAATGTTACATGAGGCAGTTATTAAGTGGAATCGAGCATTGTCACGTACGTGGTATTATGCATCGAGACATTAAAGTATCGAATATCTTAGTGAATAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCGAATACAATTAGCCCAAATAACAAGCATCCTTTAACCAGTCGTGTAGTGACTCTATGGTATCGTCCTCCCGAGCTCTTGATGGGATCAACCAGTTATGGAGTATCAGTGGATCTGTGGAGTGTAGGCTGTGTATTTGCAGAACTTTATCTCGGGAAGCCTATCCTTAAGGGTAGAACTGAGGTTGAACAACTGCACAAAATTTTTAAGCTTTGTGGTACTCCACCTGATGAATACTGGAAAAAATTTAAGCTTCCTCATGCAACAACGTTTAAACCTCAGACTACTTACGAAAGCTCTATCCGGGAGAGATGCGCAGAGTTTCCCGAAACAGCGGTAAGCTTGCTCGAGACTTTTCTGTCCATTGATCCATACAAACGCGGGACTGCTTCCTCTGCTCTAATGTCTGAGTATTTCAACACCATGCCATACCCCTGTAGTCCATCAAACCTGCCAAAGTACTCACCTAGCAAAGAAATGGACGCTAAAAATCGGGGAGATGAATCCAGGAAAAAGACCGGAGGTAAAACGCGAGAGGCTGTAACGTCAAGAAGGCAGCAAAGACGAAGCAATAAATCTTTTCAAGAACCAAAGAATTTCAATATAACAGCTTCAAAAGAGGACATGCAGAACATTTCTCTAAATGCTAGTACGGATAAGGATGACGCTAAAGGACATCTTACAAGAGGAAAAGGAGGGAATATGCAGAAAGATCATTCAATGTACACAGTGTCAGAGGCTTACCCGAATATGAATGGTGCTGCTAATAGTAAGGGCCATAGTGTACATTCAGGAAGTGTGCTTGCTCCAGGATCTAGCGGTTTTACGTGGGCGAAAAGGAGAAAACCGGATGCATCATCCGCACTATCAGATGGAGAAAGAAGCAAAATTAGTGCATTGGATCCGAACTTTGCGAAAGGCACATATGACTTGACTAGACAAGCGATTTTAGAACGAAAATATAACGACAATCATGGTCACCGGGATGCGACTTCAAGGCATGTACTACAAAAGCACCAGACTCAACCAAAGGTGCAAATGGATTTTGATCCTGCAGAACTGCTAAATCCACAGATATACAAAGAATATGGTGCAAATTGGAATGAAAATGGTCTAAGGCATGGTAAATCAAGATTAGGAAGAGGGATCAATTCATGTGTAGAACTTAGATACCAAAAAAATGTTGTCTCCTTTTCAACCATATTGATGGTGCATTATCCTCATTCCCATAGCATCAACCCCAATCTTCACTTCTCATCATTTTCCCCAATCCTCAATTTTAGGGTTCTTCTTTTTCTTCAATTAAGCTCAATCTCACTGCATCACCACTCTCTCTCTCTTCTCCCCTCAATCCCTAAAGCCACCATTTCACATCTGCTAAGGATTGAAATTGATGTTTGTGTAAAACAATTGAAAAATATTGTTTATGGTGTTGGAACCGGGAAAGGAATTGAGAATAAGATGGTTGGGCATTTTGGGTTTTCCACAACTATCAATTCGGCAATGAACATGTGTGCCTCCTCTAAACCCCAGAAAGACAGGCCTAAGTTGGTAGAAGCATACATTTCACTAAGGTGTTGTATAGTTGCTGGTTGTGTTGCACCGACATGGATTTTGGAAATGAATGGATCAACTGGCCAGGGTGGTGGTGGTGTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATCCTTAACCGCCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGGGAAATCAAAATTTTAAGATTATTCATGCATCCTCATATTATACGACTTTATGAGGTCATAGAAACCCCAACTGACATATATGTGGTTATGGAGTATGTGAAATCCGGAGAGCTCTTTGATTATATAGTTGAGAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAATACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGACTCTAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCTAACTATGCAGCTCCAGAGGTCATCTCTGGGAAACTGTATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTCCCCTTTGATGATGAAAACATTCCAAACCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGACTTGATACCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGCGCGTCTTCCGCGATATTTAGCTGTGCCACCACCAGATACAATGCAGCAAGCCAAAAAGATTGACGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAAGAATCACTTAGTTGACTCTCTTCGCAACAGGCTACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAACAGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGCTGCAATCGTATCCATTCCAGCGAAGTTGCTTCTTCAGTTGTTGGGAATCGCTTTCCGGGGTATATTGATTGTCAAGGAGCAGGAATGAGGCCGCAGTTCCCTGTTGAGAGGAAGTGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGAACGAGGTCCTTAAAGCTCTACAAGAGTTGAATGTTTCTTGGAAGAAGATTGGACACTACAACATGAAGTGCAGATGGGTTGCTGGCATTCCTGGTCATCACGAAGGAATGATTAACAATTCTGTTCATAATAATCATTACTTTGGAAATGATTCCAGCATTATTGAGGATGATGCTGTTTCTAAATCAAATGCGGTCAAGTTTGAAGTACAGCTTTACAAAACTCGAGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTTCATGGTCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTGCGCAACTTCGCGTTCTCTAG 3921 0.4188 MGCINSKNAVAKVFSPPVFGDHHSVAGTIVESGYHHHGNSGSRAYSDEKKLKKNNSKKSNGSFSFRIGFSHHRYVDAEQNAAGWPSWLTASAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDITFTDSQIKCYMRQLLSGIEHCHVRGIMHRDIKVSNILVNNEGVLKIGDFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGTPPDEYWKKFKLPHATTFKPQTTYESSIRERCAEFPETAVSLLETFLSIDPYKRGTASSALMSEYFNTMPYPCSPSNLPKYSPSKEMDAKNRGDESRKKTGGKTREAVTSRRQQRRSNKSFQEPKNFNITASKEDMQNISLNASTDKDDAKGHLTRGKGGNMQKDHSMYTVSEAYPNMNGAANSKGHSVHSGSVLAPGSSGFTWAKRRKPDASSALSDGERSKISALDPNFAKGTYDLTRQAILERKYNDNHGHRDATSRHVLQKHQTQPKVQMDFDPAELLNPQIYKEYGANWNENGLRHGKSRLGRGINSCVELRYQKNVVSFSTILMVHYPHSHSINPNLHFSSFSPILNFRVLLFLQLSSISLHHHSLSLLPSIPKATISHLLRIEIDVCVKQLKNIVYGVGTGKGIENKMVGHFGFSTTINSAMNMCASSKPQKDRPKLVEAYISLRCCIVAGCVAPTWILEMNGSTGQGGGGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDKNHLVDSLRNRLQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGCNRIHSSEVASSVVGNRFPGYIDCQGAGMRPQFPVERKWALGLQSRAHPREIMNEVLKALQELNVSWKKIGHYNMKCRWVAGIPGHHEGMINNSVHNNHYFGNDSSIIEDDAVSKSNAVKFEVQLYKTREEKYLLDLQRVHGPQFLFLDLCAAFLAQLRVL 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1427 1306 CDD UBA_SnRK1_plant 1085 1125 - -
Lal12g1427 1306 MobiDBLite consensus disorder prediction 410 444 - -
Lal12g1427 1306 Pfam Kinase associated domain 1 1263 1305 IPR001772 -
Lal12g1427 1306 Gene3D Transferase(Phosphotransferase) domain 1 190 430 - -
Lal12g1427 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lal12g1427 1306 MobiDBLite consensus disorder prediction 37 58 - -
Lal12g1427 1306 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Lal12g1427 1306 SMART serkin_6 811 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 SUPERFAMILY Protein kinase-like (PK-like) 101 398 IPR011009 -
Lal12g1427 1306 CDD AMPKA_C 1181 1303 - -
Lal12g1427 1306 ProSitePatterns Protein kinases ATP-binding region signature. 817 840 IPR017441 GO:0005524
Lal12g1427 1306 Gene3D Transferase(Phosphotransferase) domain 1 803 1141 - -
Lal12g1427 1306 Gene3D Kinase associated domain 1, KA1 1187 1304 - -
Lal12g1427 1306 MobiDBLite consensus disorder prediction 471 485 - -
Lal12g1427 1306 CDD STKc_AMPK_alpha 808 1063 - -
Lal12g1427 1306 CDD STKc_CDK9_like 107 391 - -
Lal12g1427 1306 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Lal12g1427 1306 PANTHER CELL DIVISION PROTEIN KINASE 813 1005 - -
Lal12g1427 1306 PANTHER CELL DIVISION PROTEIN KINASE 1 568 - -
Lal12g1427 1306 Pfam Protein kinase domain 811 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 SUPERFAMILY Protein kinase-like (PK-like) 808 1079 IPR011009 -
Lal12g1427 1306 SUPERFAMILY KA1-like 1120 1305 IPR028375 -
Lal12g1427 1306 MobiDBLite consensus disorder prediction 445 470 - -
Lal12g1427 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Lal12g1427 1306 ProSiteProfiles Protein kinase domain profile. 811 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 1257 1305 IPR001772 -
Lal12g1427 1306 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1427 1306 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1084 1124 IPR015940 -
Lal12g1427 1306 SMART uba_6 1086 1123 IPR015940 -
Lal12g1427 1306 MobiDBLite consensus disorder prediction 41 55 - -
Lal12g1427 1306 Pfam UBA/TS-N domain 1085 1121 IPR015940 -
Lal12g1427 1306 PANTHER CYCLIN-DEPENDENT KINASE 1 568 - -
Lal12g1427 1306 PANTHER CYCLIN-DEPENDENT KINASE 813 1005 - -
Lal12g1427 1306 MobiDBLite consensus disorder prediction 402 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1427 Lal-Chr12 17446170 17462613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1427 99 433 Core Cell Cycle Gene Families AT5G10270 46.724 7.29e-102 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lal12g1427 Pkinase 5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1427 K07198 - lang:109347355 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1427 12 17446170 17462613 Lal12g1427 12 17446170 17462613 ECH
Lal12g1427 12 17446170 17462613 Lal13g1791 13 17395078 17399944 ECH
Lal12g1427 12 17446170 17462613 Lal13g1791 13 17395078 17399944 LSH
Lal12g1427 12 17446170 17462613 Lal24g1357 24 14839863 14845789 LSH