Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal12g1427 | ATGGGTTGCATTAACTCTAAGAATGCGGTTGCGAAAGTTTTTTCGCCACCGGTTTTTGGTGATCATCATAGTGTTGCTGGAACAATTGTAGAGAGTGGTTATCATCATCATGGTAATTCTGGTTCAAGGGCTTATTCAGATGAAAAAAAGTTGAAGAAGAATAACTCAAAGAAAAGTAATGGCTCTTTCAGCTTTAGGATTGGATTCTCACATCATAGGTATGTGGATGCAGAACAAAATGCTGCTGGTTGGCCATCTTGGTTAACAGCTTCTGCAGCAGAAGCTATTCAAGGATGGATCCCTCTAAAAGCTGATTCTTTTCAGAAGTTGGAAAAGATTGGACAAGGTACCTATAGCAGTGTGTTCCAAGCACGCGAAGTTGAAAGCGGGAGGATGTTTGCATTGAAGAAGGTGCGGTTCGACAATTTACAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTTCGTAGGCTTGACCACCCAAACATCATGAAATTGGAGGGTATCATTACTTCCAGACTATCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCCGGCCTAGTATCGCGTCCTGACATCACGTTCACCGACTCACAGATAAAATGTTACATGAGGCAGTTATTAAGTGGAATCGAGCATTGTCACGTACGTGGTATTATGCATCGAGACATTAAAGTATCGAATATCTTAGTGAATAATGAAGGTGTTCTCAAGATAGGAGATTTCGGATTAGCGAATACAATTAGCCCAAATAACAAGCATCCTTTAACCAGTCGTGTAGTGACTCTATGGTATCGTCCTCCCGAGCTCTTGATGGGATCAACCAGTTATGGAGTATCAGTGGATCTGTGGAGTGTAGGCTGTGTATTTGCAGAACTTTATCTCGGGAAGCCTATCCTTAAGGGTAGAACTGAGGTTGAACAACTGCACAAAATTTTTAAGCTTTGTGGTACTCCACCTGATGAATACTGGAAAAAATTTAAGCTTCCTCATGCAACAACGTTTAAACCTCAGACTACTTACGAAAGCTCTATCCGGGAGAGATGCGCAGAGTTTCCCGAAACAGCGGTAAGCTTGCTCGAGACTTTTCTGTCCATTGATCCATACAAACGCGGGACTGCTTCCTCTGCTCTAATGTCTGAGTATTTCAACACCATGCCATACCCCTGTAGTCCATCAAACCTGCCAAAGTACTCACCTAGCAAAGAAATGGACGCTAAAAATCGGGGAGATGAATCCAGGAAAAAGACCGGAGGTAAAACGCGAGAGGCTGTAACGTCAAGAAGGCAGCAAAGACGAAGCAATAAATCTTTTCAAGAACCAAAGAATTTCAATATAACAGCTTCAAAAGAGGACATGCAGAACATTTCTCTAAATGCTAGTACGGATAAGGATGACGCTAAAGGACATCTTACAAGAGGAAAAGGAGGGAATATGCAGAAAGATCATTCAATGTACACAGTGTCAGAGGCTTACCCGAATATGAATGGTGCTGCTAATAGTAAGGGCCATAGTGTACATTCAGGAAGTGTGCTTGCTCCAGGATCTAGCGGTTTTACGTGGGCGAAAAGGAGAAAACCGGATGCATCATCCGCACTATCAGATGGAGAAAGAAGCAAAATTAGTGCATTGGATCCGAACTTTGCGAAAGGCACATATGACTTGACTAGACAAGCGATTTTAGAACGAAAATATAACGACAATCATGGTCACCGGGATGCGACTTCAAGGCATGTACTACAAAAGCACCAGACTCAACCAAAGGTGCAAATGGATTTTGATCCTGCAGAACTGCTAAATCCACAGATATACAAAGAATATGGTGCAAATTGGAATGAAAATGGTCTAAGGCATGGTAAATCAAGATTAGGAAGAGGGATCAATTCATGTGTAGAACTTAGATACCAAAAAAATGTTGTCTCCTTTTCAACCATATTGATGGTGCATTATCCTCATTCCCATAGCATCAACCCCAATCTTCACTTCTCATCATTTTCCCCAATCCTCAATTTTAGGGTTCTTCTTTTTCTTCAATTAAGCTCAATCTCACTGCATCACCACTCTCTCTCTCTTCTCCCCTCAATCCCTAAAGCCACCATTTCACATCTGCTAAGGATTGAAATTGATGTTTGTGTAAAACAATTGAAAAATATTGTTTATGGTGTTGGAACCGGGAAAGGAATTGAGAATAAGATGGTTGGGCATTTTGGGTTTTCCACAACTATCAATTCGGCAATGAACATGTGTGCCTCCTCTAAACCCCAGAAAGACAGGCCTAAGTTGGTAGAAGCATACATTTCACTAAGGTGTTGTATAGTTGCTGGTTGTGTTGCACCGACATGGATTTTGGAAATGAATGGATCAACTGGCCAGGGTGGTGGTGGTGTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATCCTTAACCGCCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGGGAAATCAAAATTTTAAGATTATTCATGCATCCTCATATTATACGACTTTATGAGGTCATAGAAACCCCAACTGACATATATGTGGTTATGGAGTATGTGAAATCCGGAGAGCTCTTTGATTATATAGTTGAGAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAATACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGACTCTAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCTAACTATGCAGCTCCAGAGGTCATCTCTGGGAAACTGTATGCTGGGCCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTCCCCTTTGATGATGAAAACATTCCAAACCTCTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGACTTGATACCAAGGATGCTTGTGGTGGATCCTATGAAGAGGATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGCGCGTCTTCCGCGATATTTAGCTGTGCCACCACCAGATACAATGCAGCAAGCCAAAAAGATTGACGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAAGAATCACTTAGTTGACTCTCTTCGCAACAGGCTACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAACAGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGCTGCAATCGTATCCATTCCAGCGAAGTTGCTTCTTCAGTTGTTGGGAATCGCTTTCCGGGGTATATTGATTGTCAAGGAGCAGGAATGAGGCCGCAGTTCCCTGTTGAGAGGAAGTGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGAACGAGGTCCTTAAAGCTCTACAAGAGTTGAATGTTTCTTGGAAGAAGATTGGACACTACAACATGAAGTGCAGATGGGTTGCTGGCATTCCTGGTCATCACGAAGGAATGATTAACAATTCTGTTCATAATAATCATTACTTTGGAAATGATTCCAGCATTATTGAGGATGATGCTGTTTCTAAATCAAATGCGGTCAAGTTTGAAGTACAGCTTTACAAAACTCGAGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTTCATGGTCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTGCGCAACTTCGCGTTCTCTAG | 3921 | 0.4188 | MGCINSKNAVAKVFSPPVFGDHHSVAGTIVESGYHHHGNSGSRAYSDEKKLKKNNSKKSNGSFSFRIGFSHHRYVDAEQNAAGWPSWLTASAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFQAREVESGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDITFTDSQIKCYMRQLLSGIEHCHVRGIMHRDIKVSNILVNNEGVLKIGDFGLANTISPNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGTPPDEYWKKFKLPHATTFKPQTTYESSIRERCAEFPETAVSLLETFLSIDPYKRGTASSALMSEYFNTMPYPCSPSNLPKYSPSKEMDAKNRGDESRKKTGGKTREAVTSRRQQRRSNKSFQEPKNFNITASKEDMQNISLNASTDKDDAKGHLTRGKGGNMQKDHSMYTVSEAYPNMNGAANSKGHSVHSGSVLAPGSSGFTWAKRRKPDASSALSDGERSKISALDPNFAKGTYDLTRQAILERKYNDNHGHRDATSRHVLQKHQTQPKVQMDFDPAELLNPQIYKEYGANWNENGLRHGKSRLGRGINSCVELRYQKNVVSFSTILMVHYPHSHSINPNLHFSSFSPILNFRVLLFLQLSSISLHHHSLSLLPSIPKATISHLLRIEIDVCVKQLKNIVYGVGTGKGIENKMVGHFGFSTTINSAMNMCASSKPQKDRPKLVEAYISLRCCIVAGCVAPTWILEMNGSTGQGGGGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDKNHLVDSLRNRLQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGCNRIHSSEVASSVVGNRFPGYIDCQGAGMRPQFPVERKWALGLQSRAHPREIMNEVLKALQELNVSWKKIGHYNMKCRWVAGIPGHHEGMINNSVHNNHYFGNDSSIIEDDAVSKSNAVKFEVQLYKTREEKYLLDLQRVHGPQFLFLDLCAAFLAQLRVL | 1306 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal12g1427 | 1306 | CDD | UBA_SnRK1_plant | 1085 | 1125 | - | - | |
| Lal12g1427 | 1306 | MobiDBLite | consensus disorder prediction | 410 | 444 | - | - | |
| Lal12g1427 | 1306 | Pfam | Kinase associated domain 1 | 1263 | 1305 | IPR001772 | - | |
| Lal12g1427 | 1306 | Gene3D | Transferase(Phosphotransferase) domain 1 | 190 | 430 | - | - | |
| Lal12g1427 | 1306 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 227 | 239 | IPR008271 | GO:0004672|GO:0006468 | |
| Lal12g1427 | 1306 | MobiDBLite | consensus disorder prediction | 37 | 58 | - | - | |
| Lal12g1427 | 1306 | ProSitePatterns | Protein kinases ATP-binding region signature. | 113 | 136 | IPR017441 | GO:0005524 | |
| Lal12g1427 | 1306 | SMART | serkin_6 | 811 | 1063 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lal12g1427 | 1306 | SMART | serkin_6 | 107 | 391 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lal12g1427 | 1306 | SUPERFAMILY | Protein kinase-like (PK-like) | 101 | 398 | IPR011009 | - |
Showing 1 to 10 of 36 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal12g1427 | K07198 | - | lang:109347355 | 1214.91 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal12g1427 | 12 | 17446170 | 17462613 | Lal12g1427 | 12 | 17446170 | 17462613 | ECH | |
| Lal12g1427 | 12 | 17446170 | 17462613 | Lal13g1791 | 13 | 17395078 | 17399944 | ECH | |
| Lal12g1427 | 12 | 17446170 | 17462613 | Lal13g1791 | 13 | 17395078 | 17399944 | LSH | |
| Lal12g1427 | 12 | 17446170 | 17462613 | Lal24g1357 | 24 | 14839863 | 14845789 | LSH |
Showing 1 to 4 of 4 entries