Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1402 ATGGGTTCTGTTTGTTGTTGTTTCAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTGTATAGGAACTGTGCGTGTCTCAGTTGCTTTATACAGAACCTCTTGACTATGTATGCGGCAATTTTCCGAAGAGGAGAAGTGAATTCAGTTCCTTCATCTCTTCAAGGGGCAGCATCCTTGTCTTCTACAGCATCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCCAGGTATTTTCGCTCAAGGCGTGAGAAGGGTTCAAGTCATTTGAATGAGGAATCAGAACCTCTAAGAAGTGATGTAGATATGGACTTAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTGCAGGTGAAGATGGACCAAAGGAATATTGTTCCAAGTCCTCACTAAAACTTTCATCGGCAAAATATACAACCGGTGTTGGGCTTGTCTATGCATCGTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTCGAAGAATACACCAAAGAGAATCCGAAAATAATGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGGAGTGACAGTTGTCCAGTTTGTGGAAAGGTGATGGTATTCGAAGAAACACTTACTCTTGATTAA 672 0.4048 MGSVCCCFSFDDFEDYVNPNSSVYRNCACLSCFIQNLLTMYAAIFRRGEVNSVPSSLQGAASLSSTASLDNSLSDMYRSPPRPLPYDAEPRYFRSRREKGSSHLNEESEPLRSDVDMDLESLSSGDKWNECAGEDGPKEYCSKSSLKLSSAKYTTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFEETLTLD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1402 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 215 IPR013083 -
Lal12g1402 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 219 - -
Lal12g1402 223 ProSiteProfiles Zinc finger RING-type profile. 170 210 IPR001841 -
Lal12g1402 223 SUPERFAMILY RING/U-box 165 216 - -
Lal12g1402 223 Pfam RING-H2 zinc finger domain 165 210 IPR024766 GO:0008270
Lal12g1402 223 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 219 - -
Lal12g1402 223 SMART ring_2 170 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1402 Lal-Chr12 17128499 17132885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1402 1 221 C3H Transcription Factor Family AT5G38895 57.207 1.69e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1402 - - gmx:100777068 389.808