Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1400 ATGTGTTTTATCGGCTACCGGGAAGATAAAATAGTTCAGAAGTCGGTCTGGCTGATTTTTGAGATTTTTGAGATGGAAGAAGAAATGAACACGAATAATGAAACTCACTGTCAGGCAGAGGGTTTAGATGAATTTAATGGTAGTGAAGATGAAAATGTGAATGAAGTAGAGGAGTTAGATTTTGAAGAGATTAATTTTCGATTATTAAATGAAGATGAAGTGAAGAAATATAGGTTTTTAAACAATGATATCGCTTACAAATTTTATAAGATGTATGGTATGAAGAAAGGATTTGGCATTAGAAAATATCATACTCGGCGAAACAAGGATGGTGAAATTATATGGCAATCATTTTTTTGTGATAGGGAAGGATTTAGAGATAAGAAAAATGAATTGGTTCGGAAGAGGGCGCCGAGAAAAGAGACTAGATGTGGTTGTTTAGCAAGAATGAAAATCCACATTGACAATGAAAAAGGAGATTGGTATGTTAGTTATTTTGTTGATGAACATAATCATGAATTGGTGGGTGAACATTACGGTGCAATGATAGCCTCTAACCGAAGAATGACAGAGACAGTTGTGGCTCAGATGAACACAATGAGAGAAGTGGGGATTGGGACAGGAAAAATATTTGGTTCGTTTGCCGGTCAATGTGGTGGATATCAGTATATTGGGTTCTCCAAGAAGGACATGTATAATCAAATTCAGAAGCAAAGAATAATAGGAAATGATGACGCAGAATCAGCATTACAATACTTAAAGGACCAATCAAAATCAGATTGTGCAATCATTTTCGACTACTCAATTTTTGGAGATGTTCTTGCTTTTGATGCAACTTATGGTCGAAACAAATACAAGTTCCCAGTTGTAATTTTTTCTGGTGTGAATCATCACAAGCAAACGACTGTGTTTGGCGCCGCTGTTGTGTCAAATGAGACAGAGGAAACATACATTTGGCTTTTGGAGAAATTTTTGGAGGCAATGATTGGGAAACAACCCAAGTGTGTTATCACTGATGGTGACTTGTCGATGAAGAATGCAATCAAAAGAGTTTTTCCCGAAGCACACCATAGACTATGTGCTTGGCATATATGTAACAATGCTGGGAAAAATATAAAGAAAAATAACTTTCATAAGGATTTCCAAAAAGTTATGTATGTTGATGTTGATATTGATGATTTTAATATGATGTGGGAAGAACTTATTGCTAAGCATGGACTTCATAACAATGCATGGGTCGCTCAGATTTTTGATTGCAGAAGTATGTGGGCGAGGTCTTACATTCGGGGAAAGTTCTATGCTGGTTTGCATACTACATCACGTTGTGAGGGATTACACTCACAAATGGGGAGGTATATAGAATATGGGTATAATGTTACTGAATTTCTACATCACTTTCAACGATGTCTAAGTCACATGAGGAACAATGAGGTGATGGAAGATTTTAAATCTTCATATGGTGATGAGTTGTTACAAACTCCTTATCATAATTTAGAGGGTCATGCTGCTTCGATATATACTAGGGTTGTTTTCAAAGAATTTCGTGCAGTTTTCTTGGAAGCTGCAAAATTAAGGATTATTTCTACCCAACAAACATCGACTCATGTAATATACAAGATTGGGAAGCATTACAGTCCGAACAAGAAATGGCATGTATCACATTATGACAATGGCAGTATCGTGGACATTAAATGCTCGTGTAAAAGAATGGAATCTTTTGGGATGCCATGTAGTCATAGTGTTTTTGTCTTACTAATTTTGGACATATCACAATTGCCATCTTGTTTGGTTCTTGAAAGATGGACAAAGAAAGCGAAATATGTTCAAGGTGTCAATTTCCAACAATGCGAATTAAGTAAAGAATCAGTTAATAGTAGTAGATATGGAGCTTTGAGTGATGGTTGTAGGGTGTTATGTAATCTTGCTTGCAAAACGGAGGAAGACTTTACTGAGATGCTGGAAAAAGTTTATAACGAATGTAGTAGACTCCGATCAAAACAACACTCTAGTGCGATGGAAAATGTTGACAATGCCACTGAAGATCAAGTAAGAGACCCAGTTCGAGTGCGTGCTAAAGGAAGAGTACCGGGGATTACCTCATGGCCCAAGCGAGGTAATCATTGTGGTATATGTCGAGAAATTGGCCACAATAGGGCAAGTTGTCCAAATGTTGTTGGTAGTTGTAGTCGTACTTTTGATAATGATTTCGATGAAGAATGA 2220 0.3676 MCFIGYREDKIVQKSVWLIFEIFEMEEEMNTNNETHCQAEGLDEFNGSEDENVNEVEELDFEEINFRLLNEDEVKKYRFLNNDIAYKFYKMYGMKKGFGIRKYHTRRNKDGEIIWQSFFCDREGFRDKKNELVRKRAPRKETRCGCLARMKIHIDNEKGDWYVSYFVDEHNHELVGEHYGAMIASNRRMTETVVAQMNTMREVGIGTGKIFGSFAGQCGGYQYIGFSKKDMYNQIQKQRIIGNDDAESALQYLKDQSKSDCAIIFDYSIFGDVLAFDATYGRNKYKFPVVIFSGVNHHKQTTVFGAAVVSNETEETYIWLLEKFLEAMIGKQPKCVITDGDLSMKNAIKRVFPEAHHRLCAWHICNNAGKNIKKNNFHKDFQKVMYVDVDIDDFNMMWEELIAKHGLHNNAWVAQIFDCRSMWARSYIRGKFYAGLHTTSRCEGLHSQMGRYIEYGYNVTEFLHHFQRCLSHMRNNEVMEDFKSSYGDELLQTPYHNLEGHAASIYTRVVFKEFRAVFLEAAKLRIISTQQTSTHVIYKIGKHYSPNKKWHVSHYDNGSIVDIKCSCKRMESFGMPCSHSVFVLLILDISQLPSCLVLERWTKKAKYVQGVNFQQCELSKESVNSSRYGALSDGCRVLCNLACKTEEDFTEMLEKVYNECSRLRSKQHSSAMENVDNATEDQVRDPVRVRAKGRVPGITSWPKRGNHCGICREIGHNRASCPNVVGSCSRTFDNDFDEE 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1400 739 Pfam FAR1 DNA-binding domain 87 175 IPR004330 -
Lal12g1400 739 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 268 IPR031052 GO:0006355
Lal12g1400 739 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 265 669 IPR031052 GO:0006355
Lal12g1400 739 Pfam MULE transposase domain 273 367 IPR018289 -
Lal12g1400 739 ProSiteProfiles Zinc finger SWIM-type profile. 550 588 IPR007527 GO:0008270
Lal12g1400 739 PANTHER OS02G0262500 PROTEIN 265 669 - -
Lal12g1400 739 PANTHER OS02G0262500 PROTEIN 77 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1400 Lal-Chr12 17100608 17103531 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal12g1400 MULE 3.6e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1400 - - lang:109350553 649.818