Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1396 ATGGTTCGTCAAGCTGATTTAGTTATCATCGGTGTCACTGTTGGTTTGGCCCTTGGAATTCTGATCTCCTGCCTCATATTTTTCGGCATAAGGTGGTATAAGAAACATGCTAATATTAGGCGATCTGCAAATGAGAATAGCGTAACAACTCTTCCGATAAGAACAAATGGATTGGAAACAAGTACCGACTTCAGTGCATCTATTACTAGTTCCATGGGCATGTCTAGATCAGGAAATGTACACACAAATTCCCATTTCAGTTGGTGGAGTCATCAAAGCAAAGATCGGTTTGCTTCACCATCGGGCATTCCTAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAATTTCACGACGACATTGGGACAAGGATCATTTGGCACAGTTTATAAAGCCACAATGCCTGCAGGGGAGGTGGTAGCTGTGAAGGTGCTTGCACCAAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTGCTTCTGCTAGGAAGACTACATCATCGCAATCTTGTGAATTTGGTCGGATATTGTGTAGATAAAGGACAGCACATGCTGGTTTACCAGTTCATGAGTAATGGAAGTTTAGCAAATCTTCTATATGGTGAAGAAAAGAAATTGAGTTGGGATGAAAGGCTGCAAATCGCTCTTGATATTTCACACGGGATAGAATACCTTCATGAAGGAGCTGTCCCACCGGTCATACATCGTGATTTGAAGTCTGCCAACATATTGTTAGATCACTCGATGGGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGGTATTTGATGGCCGGAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCGGCGTACATTTCCACAAGCAAGTTAACAACGAAGAGCGACATCTACAGTTTCGGTATCATAATCTTTGAACTCATCACTGCCATCCACCCACATCAAAATCTGTTGGAATACATTAGCCTTGCTGCTATGGATCATGATGGCATAGATGGCATTGTTGACAAGCAACTTGTGGAAAACTGCAACATTGAAGAAGTGAGACATCTTGCTAAAATTGCACACAAGTGTTTGCACAAATCACCGAGGAAACGACCTTCAATAGGCGAGGTTTCGCAGAGTATATCGTGGATAAAGCAAAGGCGGCAGCGGCATGCGATAGGACAGAACATGTCGTTTGCGAGCAATGACTTTTCCAGAGCTGCGAGTCGATTAGAAGATCGGCAGGTTGAATTGAGCAGGATAGCTAGTATGGACCTCAAAGAAAATGGATGA 1275 0.4298 MVRQADLVIIGVTVGLALGILISCLIFFGIRWYKKHANIRRSANENSVTTLPIRTNGLETSTDFSASITSSMGMSRSGNVHTNSHFSWWSHQSKDRFASPSGIPKYSYKEIQKATQNFTTTLGQGSFGTVYKATMPAGEVVAVKVLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGQHMLVYQFMSNGSLANLLYGEEKKLSWDERLQIALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMGAKVADFGLSKEEVFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIIIFELITAIHPHQNLLEYISLAAMDHDGIDGIVDKQLVENCNIEEVRHLAKIAHKCLHKSPRKRPSIGEVSQSISWIKQRRQRHAIGQNMSFASNDFSRAASRLEDRQVELSRIASMDLKENG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1396 424 Gene3D Phosphorylase Kinase; domain 1 79 191 - -
Lal12g1396 424 SUPERFAMILY Protein kinase-like (PK-like) 95 379 IPR011009 -
Lal12g1396 424 CDD STKc_IRAK 122 373 - -
Lal12g1396 424 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Lal12g1396 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Lal12g1396 424 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Lal12g1396 424 ProSiteProfiles Protein kinase domain profile. 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1396 424 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Lal12g1396 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Lal12g1396 424 PANTHER OS01G0750732 PROTEIN 9 419 - -
Lal12g1396 424 SMART serkin_6 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1396 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1396 Lal-Chr12 17049679 17054724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1396 71 380 Receptor kinase-like Gene Family AT1G79620 41.846 8.69e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lal12g1396 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1396 - - gmx:100819995 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1396 12 17049679 17054724 Lal12g1396 12 17049679 17054724 ECH
Lal12g1396 12 17049679 17054724 Lal13g1751 13 17070626 17075133 LSH