Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1378 ATGCGTATGAGTTGTAATGGATGCAGGGTATTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGCAATGGATCAAGAACCCAGAATCACAAGCTAATGCTACTGTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAACCTCATCAACGCTGCCCCTCAAAACCTTCGCCCAGCTATTTTTCGATCTTTGCTATATGAGGCATGTGGGCGAATAGTGAACCCGATTTACGGATCAGTTGGTCTATTATGGTCTGGTAGCTGGCAGCTTTGTCAAGCCGCCGTTGAAGACGTTTTGAACGGTGCACCGATCACACCAATAACTTCAGAGGCGGCTTCTAACGGGAGGGGCCCACCTTTCAAGCCCTACGACATACGCCACGTGTCCAAAGAAGTTCAAGGTGTCAAGTCTAGAACCCGGTTCAAACGGACCGGAGGAGAAGACGGTGAGAAGCCAGATGTTAGCAGTGTGTCCCGGTTCGGTCCAGTTGAACCGGAATCTGAAGAGGGGGTGAACCGGTCTGCGAGTCACGAGTCGGGGCTGAGCCACCAGTCTGAGGTGGCGGCCGCGGTGGAAGGAGAGAGCAAATATAGTGATAGTGCGGTGTCAGCTGAGACGCCGGTTTTATTTCATGATGAACCGGAGTCAGATGGTTTGGAATTGACGCTGGGGTTTGAACCGGTGTCACGTGTGCAGCACATGGTACCAGTGAAGAAGAGAAAGATTGAATTATTTAATAATAGTTATGTCGAAGAGAGTGAATCTTGCTCTAAGGTTAATTTGGGGCTTCAATATCCGGTTTGA 819 0.486 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLINLINAAPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEDVLNGAPITPITSEAASNGRGPPFKPYDIRHVSKEVQGVKSRTRFKRTGGEDGEKPDVSSVSRFGPVEPESEEGVNRSASHESGLSHQSEVAAAVEGESKYSDSAVSAETPVLFHDEPESDGLELTLGFEPVSRVQHMVPVKKRKIELFNNSYVEESESCSKVNLGLQYPV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1378 272 MobiDBLite consensus disorder prediction 139 159 - -
Lal12g1378 272 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lal12g1378 272 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Lal12g1378 272 PIRSF AS2 1 166 IPR017414 -
Lal12g1378 272 PIRSF AS2 155 270 IPR017414 -
Lal12g1378 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 261 - -
Lal12g1378 272 MobiDBLite consensus disorder prediction 139 203 - -
Lal12g1378 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1378 Lal-Chr12 16895918 16897746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1378 1 268 AS2 family AT3G02550 59.854 4.92e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal12g1378 LOB 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1378 - - gmx:100814175 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1378 12 16895918 16897746 Lal12g1378 12 16895918 16897746 ECH
Lal12g1378 12 16895918 16897746 Lal13g1705 13 16697645 16699562 ECH
Lal12g1378 12 16895918 16897746 Lal13g1705 13 16697645 16699562 LSH