Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1356 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTATGAAGAGAGGTCCATGGACAATTGAAGAAGATCATAAGCTTATGAATTTCATCCTCAACAATGGTATCCATTGTTGGAGAACAGTTCCCAAACTTGCAGGTTTGCTGAGATGTGGAAAAAGTTGTAGATTGAGATGGATTAATTATCTAAGGCCAGATCTTAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATAGAACTACATTCACTTCTTGGTAACAGGTGGTCTAAGATTGCAACACATTTTCCTGGTAGGACAGACAACGAAATCAAGAACCATTGGAACACAAGAATTAAGAAGAGGTTGAAGCTCCTTGGTCTAGACCCTATGACCAAGAAGCCAATTGAGCAAATGGAACATTTTGATAATGGTGAAAAAAATAAGACACATCTACATCCAAATACTTCAAAAGGGTCAGAAGAAAATATAGAGATCAAGTCCTTAGACAATAATGGAATAGAAGATATACCAAAAATAGAAGGGAAAATAGAAGAAAACATGGTTACATGGATAAGCCAAGAAAACAACACAAGTGCTAGCTCTTATTGTAGTTCTTCTTTCTCTCTTGATGAATCTAGCTACCCTTTTGTGGGTCAATGCCCTTATTTTCAAGGAGACTCCTTACAACAATGGGTTGATAATATGGATTGCATTCTCTCATGGGATACCTTCAATCCACTTGAAGATGATTTTCTCTTCTTGGAAAATAAGCAACAAGTATAA 765 0.366 MGRQPCCDKVGMKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIELHSLLGNRWSKIATHFPGRTDNEIKNHWNTRIKKRLKLLGLDPMTKKPIEQMEHFDNGEKNKTHLHPNTSKGSEENIEIKSLDNNGIEDIPKIEGKIEENMVTWISQENNTSASSYCSSSFSLDESSYPFVGQCPYFQGDSLQQWVDNMDCILSWDTFNPLEDDFLFLENKQQV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1356 254 MobiDBLite consensus disorder prediction 135 160 - -
Lal12g1356 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal12g1356 254 PANTHER MYB DOMAIN PROTEIN 40 2 207 - -
Lal12g1356 254 Gene3D - 13 66 - -
Lal12g1356 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g1356 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g1356 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal12g1356 254 CDD SANT 16 61 IPR001005 -
Lal12g1356 254 SMART sant 13 63 IPR001005 -
Lal12g1356 254 SMART sant 66 114 IPR001005 -
Lal12g1356 254 CDD SANT 70 110 IPR001005 -
Lal12g1356 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 207 - -
Lal12g1356 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal12g1356 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g1356 254 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lal12g1356 254 Gene3D - 68 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1356 Lal-Chr12 16671708 16673700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1356 1 205 MYB Transcription Factor Family AT5G16600 55.122 2.10e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g1356 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1356 K09422 - gmx:100819471 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1356 12 16671708 16673700 Lal12g1356 12 16671708 16673700 ECH
Lal12g1356 12 16671708 16673700 Lal24g1271 24 14044700 14046343 LSH