Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1354 ATGGCTGTAACTGAAAATCGTGAGAAAAATGATGGTACAAGCAATGGACTTGAGGTACTTGATGGACAAGCTAGTGAAATTTCATCAAATGATGCTACAATTAGCAACAATGTAGTTTCCCAACATCCTGAAGAGATTGACGAAACAAAGAAATGTTTAGTGCAGCAGAAAGTTGGCCTCGAACGTCAAAACGAGGGCAAGGCTAAGTTTGGCAGTGATGAGAAGAGGATGATAAGTAACTGTTGTAATGATGAAAATTCGTTTCAAAAGAAAGCCAAGGTCAATCATAGTGATAGTGGAGTGCCATGTGTTGCTGGTGAGGATGATCTTCTCTCAAATTATACAAATTATTTTCCTCATGAAATGGACAAAAGGATCATTTTAAGGTTAAAAGAGATGTTGAGGCTTGTCAATCTCAGAAGGCTTCAATCTGTAGAGGAAGAGAAGAATAGATGCAAGAACGAAGAAGATAATAATAATTTGGGAGCTGGTGAATTTTCAAGGAAAAGGCTCCGTTCTGCTACACGAAGACAACTACCCAAAGCTCCTGAATATCCATGGTATGCTATAAACAAAAGAAGTTGCTGTTTTTTCAGATTGGTTTGTAAGGATATCAGCCACGGTCAAGAAGATAATAGCATTCCTGTTATCAATGAGTGTGATGTTCCTCCTGATGCACCTGCTAGCTTCACATATATCAAATCTATGCAAGTTTCGGACAACGTGAAGGTTCCAGTTAGAGCTGATGGATGCCGGTGCAAGGAAAGTTGTACGGAGCCATGGAGTTGTTCCTGTGTTCATCTAAATGGATCTGCTCCATATGTCCCTCAAGATGGTGGAAGATTGGTTGCACCAAGAGATGTGGTGTTTGAATGTGGGCCAAAATGTGGATGTGGACCAGATTGTGGTAATAGAGTATCCCAGTGTGGAATAAAGTATAAGCTTCAGGTTTTTCGTATGCCTGATAAAGGTTGGGCTGTCAGAACACTGGAAAAGATTCCCGAGGGTGCACCGGTTTGTGAATACATCGGTACACTAAAGAGAAGTGATGAGGTAGAGAATGATACAGATAATAGCTACTTCTTTGAGATTGATTGTAAGCAGACAATCAATGAGATAGAGGGAAGGGAGAGACGGTTGTGTCATGTGCCATTGCCCACTAGCTCATCGGTTGATACTGAGACAACAGAAACTGAACCCGAGTTCTGCATAGATGCAGGCTCCTATGGTAATGTTGCAAGGTTTATCAACCACAGTTGTGAGCCAAACCTCTTCGTACAGTGTGTCCTAAGCGGCCATCATGACATCAGACTAGCTCGGGTGGTGCTATTTGCTGCAACAGATATATGTCCTTACCAAGAACTTACATATGACTATGGCTACCAACTTGATAGTGTTATTGGAGCAGATGGAAATATCAAGCATATGTCTTGCCATTGTGGTGAACCTAACTGTCGTAAACGATTGTACTAG 1473 0.4141 MAVTENREKNDGTSNGLEVLDGQASEISSNDATISNNVVSQHPEEIDETKKCLVQQKVGLERQNEGKAKFGSDEKRMISNCCNDENSFQKKAKVNHSDSGVPCVAGEDDLLSNYTNYFPHEMDKRIILRLKEMLRLVNLRRLQSVEEEKNRCKNEEDNNNLGAGEFSRKRLRSATRRQLPKAPEYPWYAINKRSCCFFRLVCKDISHGQEDNSIPVINECDVPPDAPASFTYIKSMQVSDNVKVPVRADGCRCKESCTEPWSCSCVHLNGSAPYVPQDGGRLVAPRDVVFECGPKCGCGPDCGNRVSQCGIKYKLQVFRMPDKGWAVRTLEKIPEGAPVCEYIGTLKRSDEVENDTDNSYFFEIDCKQTINEIEGRERRLCHVPLPTSSSVDTETTETEPEFCIDAGSYGNVARFINHSCEPNLFVQCVLSGHHDIRLARVVLFAATDICPYQELTYDYGYQLDSVIGADGNIKHMSCHCGEPNCRKRLY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1354 490 SMART preset_2 202 297 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g1354 490 ProSiteProfiles Post-SET domain profile. 474 490 IPR003616 -
Lal12g1354 490 Gene3D SET domain 197 490 IPR046341 -
Lal12g1354 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 199 489 - -
Lal12g1354 490 ProSiteProfiles SET domain profile. 313 460 IPR001214 GO:0005515
Lal12g1354 490 Pfam SET domain 324 460 IPR001214 GO:0005515
Lal12g1354 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 199 489 - -
Lal12g1354 490 SMART set_7 313 466 IPR001214 GO:0005515
Lal12g1354 490 Pfam Pre-SET motif 205 305 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g1354 490 ProSiteProfiles Pre-SET domain profile. 249 310 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal12g1354 490 SUPERFAMILY SET domain 199 466 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1354 Lal-Chr12 16644671 16652123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1354 200 490 EF-hand Containing Proteins AT5G13960 59.184 2.59e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal12g1354 SET 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1354 - K11420 lang:109347435 912.524