Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1347 ATGAGACAAATTGACTTTTATCTTTTGGTTCTTTCTTTGTTTGTGTTCATTCCAAACACTCATGAGCTAGAACAAGCTCAGACACAAGTCTTGTTACAATTAAGGAATTATTTAGAGTACCCTTCATCTTTGCAAATTTGGGAAAATTACTATTGGGACTTATGTAGTGTTCCTTCATCTGCATACATGAGCATTAAATGTCAGAATAATGCAGTAACTGAGCTTAAAATCATGGGAGATAAATCATTGAAGCCATCAACAAGGTTTAATGGATTTACTATTCCAAATCAGACACTATCTGTGAATTTCACCATTGATTCATTTTTCACCACATTGACAAGGTTAACAAGCTTAAGAGTTCTTAACTTAGTGTCCTTAGGACTTTGGGGGGAATTACCTAATATGATTCATAGATTGTCTTTGCTTGAAGTTTTGGACTTGAGCTCAAATTTCTTGTTTGGTGCTATTCCACCAAGAATGTCTAAAATGGTAAAGCTTCATACACTAGCACTTGATGGCAATTACTTTAACACCACTATGCCGAATTGGTTTGATTCATTGTCTAATCTAAGTGTGTTGAGTTTGAAGAGAAACCACTTAAAGGGTTCATTCCCTTCATCACTATGTAAAATTAAGTCACTTCAAGTTATTTCCTTGTCACACAATGAGCTTTCTGGTGGATTGCCTAGTTTCAATAATCTCACTGGCTTACATGTTTTGGACTTGAGAGAAAATCATTTAGATTCTGAGCTACCGATTTTTACGAAAGCAGTAGTGACTGTTCTTATGAGCAACAACTCATTCTCAGGAGAGATTCCGAGGCAGTTTAGAGAATTGAGTCAGCTTCAACACCTAGATCTTTCATCAAATCATCTCAGTGGGGTACCCCTATCTGCATTGTTCTCTTTGCCAAGCATAAGTTATTTGAATTTAGCAAGAAATGTGCTAAGCGGTTCCCTTGTGGAAAAACTAAGTTGCGGCAGCGAACTTGGGTTTGTGGATATTTCTAGCAACAAGTTACATGGTGGACTTCCTTCTTGCTTGGCCAACACTTCTGGTAGAAGAGTTGTTAAATATGGTGGAAATTGTTTATCACTCGAGTCTCAGCCTCAAGCGCGAAGGTCTTATTGTAAAGATTCCAGCTCGGTATGGACAAAATTCAAGGCTTGGGAAATAGCTGCAGCTGTGGCCATCATTGTTGTACTTGTTATTGTGATTTTGGTGTTTGGAGTTTTCTTATGCAAAAAACTTCATTCGAGAAAGACAACGGAGGAGGTTGTGTTGCCTAAGCTTCTCCAAGATAACTCCACAACAAGATCAGGCGTTTCATCTGAAATCCTTGCAAGTGCTAGACTTATTTCACAAGCAATGAAGCTAGGGACACAAACTATTCCAAGTTGTCGACAAACTTCAATAGAAGAACTGAAGGAAGCCACAAAAAACTTTGACATCTCAACTTATATTGGTGGAGGCTCCATAGGGAAGCTGTACAAAGGTAAACTAGAGAATGGATCCTTCGTGATCATACGATCTTTGGCTCTATCAAAGAAATGCTCAATTCAAAATCTTAAAACTCGGCTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTTAGCCTCTTGGGCCATTGTATTGATGTTGCACAAGATAATTACACTAACCACAAACTTCATCTTGTATACGAGTACGTGCCGAATGGGAATTATCGTACCTATCTGTCAGAATTCACTACCGGGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCTAAGGCTGTGCATTTCTTACATACTGGTGTTATACCAGGTTGTTTTAGTAACCAATTGAAGACAAAAAATGTTTTACTTGACGAGCATCGCATTCCAAAACTAAGTGACTATGGCATGTCTATCATCACAGAAGAGATCGAAAAGTTCGAGGGAACAACTTGCAACTGTATTCTTAACTACCTTGTTGCGATTAATATGCTACACAATTCAATAGCATTGCCCTTCCAAGGAACAAAATTGGGGGATGATGTTTATAACTTTGGATTCATATTGCTCGAGTCACTTGTCGGGCCGGTAGCAAATGATAACGGAGAAACATTTTTCCTAAATGAAAAGGCATCATTTGATAGTCAAGATGGTAGAAAAAAGATTGTAGATCCTGTAGTGTTAACAACATGCTCTCAAGAATCACTATCAATTGTAATATCTATAACAACAAAATGCATTTCTCGAGATTCGGCATCTCGTCCTTCTTTCGAAGATGTCTTGTGGAATTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAGAAATCAGATTCTCCATCGTAA 2349 0.3802 MRQIDFYLLVLSLFVFIPNTHELEQAQTQVLLQLRNYLEYPSSLQIWENYYWDLCSVPSSAYMSIKCQNNAVTELKIMGDKSLKPSTRFNGFTIPNQTLSVNFTIDSFFTTLTRLTSLRVLNLVSLGLWGELPNMIHRLSLLEVLDLSSNFLFGAIPPRMSKMVKLHTLALDGNYFNTTMPNWFDSLSNLSVLSLKRNHLKGSFPSSLCKIKSLQVISLSHNELSGGLPSFNNLTGLHVLDLRENHLDSELPIFTKAVVTVLMSNNSFSGEIPRQFRELSQLQHLDLSSNHLSGVPLSALFSLPSISYLNLARNVLSGSLVEKLSCGSELGFVDISSNKLHGGLPSCLANTSGRRVVKYGGNCLSLESQPQARRSYCKDSSSVWTKFKAWEIAAAVAIIVVLVIVILVFGVFLCKKLHSRKTTEEVVLPKLLQDNSTTRSGVSSEILASARLISQAMKLGTQTIPSCRQTSIEELKEATKNFDISTYIGGGSIGKLYKGKLENGSFVIIRSLALSKKCSIQNLKTRLDLLSKLQHPNLVSLLGHCIDVAQDNYTNHKLHLVYEYVPNGNYRTYLSEFTTGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTKNVLLDEHRIPKLSDYGMSIITEEIEKFEGTTCNCILNYLVAINMLHNSIALPFQGTKLGDDVYNFGFILLESLVGPVANDNGETFFLNEKASFDSQDGRKKIVDPVVLTTCSQESLSIVISITTKCISRDSASRPSFEDVLWNLQYAAQVQATADADQKSDSPS 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1347 782 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Lal12g1347 782 Pfam Leucine rich repeat 263 316 IPR001611 GO:0005515
Lal12g1347 782 SUPERFAMILY Protein kinase-like (PK-like) 463 762 IPR011009 -
Lal12g1347 782 ProSiteProfiles Leucine-rich repeat profile. 281 301 IPR001611 GO:0005515
Lal12g1347 782 Gene3D Ribonuclease Inhibitor 24 256 IPR032675 -
Lal12g1347 782 PANTHER OS07G0166700 PROTEIN 5 779 IPR045272 GO:0004714|GO:0006468
Lal12g1347 782 Pfam GRB2-binding adapter (GAPT) 393 476 IPR021082 GO:0016021
Lal12g1347 782 Pfam Protein tyrosine and serine/threonine kinase 485 760 IPR001245 GO:0004672|GO:0006468
Lal12g1347 782 ProSiteProfiles Protein kinase domain profile. 482 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g1347 782 Gene3D Phosphorylase Kinase; domain 1 444 564 - -
Lal12g1347 782 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 5 779 - -
Lal12g1347 782 SUPERFAMILY L domain-like 85 364 - -
Lal12g1347 782 Gene3D Ribonuclease Inhibitor 257 371 IPR032675 -
Lal12g1347 782 Gene3D Transferase(Phosphotransferase) domain 1 565 781 - -
Lal12g1347 782 SMART LRR_typ_2 279 303 IPR003591 -
Lal12g1347 782 SMART LRR_typ_2 234 256 IPR003591 -
Lal12g1347 782 SMART LRR_typ_2 139 163 IPR003591 -
Lal12g1347 782 SMART LRR_typ_2 187 211 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1347 Lal-Chr12 16594738 16600190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1347 8 707 Miscellaneous Gene Families AT5G14210 56.197 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Lal12g1347 PK_Tyr_Ser-Thr 8.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1347 - - gmx:100799183 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1347 12 16594738 16600190 Lal12g1347 12 16594738 16600190 ECH