Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1342 ATGGCGAGGAAGAGAAAGGTGCCACCAAATTCTACTCAATCGGAACAACCACCATTGAAGCATCATCATCATCAACAAGAACAACAACCTCAACTTGATTCGGATGAAGAACTCGAAGAAGAAGTAGAACAATTAGAACAACAACAAGAACAAAACGACGTCGCACAATATAAATATAATAATAATCAGACGTTCAATTTGCCCTCCACGTCATCAACCCTCGCCGGCGATGACGACGATCCGATCCAGAATCTTCTAGAACATTTCGGGAAGGACCAACTCGCGACTCTTCTCTGCGACGCCGCCGCCAACCACCGCGACGTGGCGGAACGTATCCGTAACACGGCCAATGCGGGCCCTTCCCACCGGAAGATCTTTGTCCACGGTCTCGGCTGGGACACCACAGCCGAAACCCTAACCTCGGCGTTCCGTGAATACGGCGAGATTGAAGACTGCAAAGCGGTGACTGACAATATCACCGGAAAGTCCAAGGGCTACGGCTTCATCCTTTTCAAGACCCGCTCCGGTGCCCGCAAGGCGCTGGAGCAACCACAGAAGAAGATTGGGAATCGAATTACTTCGTGCCAGCTGGCATCCCTTGGTCCTGTTCAGCAGCAACCGAATAACGCGGCACAGGCGAGTTTTAGTAATTCGCCTGTGCCGAGTAAATCGGCTGCATTTGTGGTACCAGTGGGGTCAGATTACACGCAGAGGAAGATTTTTGTGAGTAATGTGGGGACTGAATTGGATCCCCAGAGGTTGCTTGCATTTTTCTCGAAGTTCGGGGAGATAGAGGAAGGACCCATGGGGCTTGATAAAGTGACTGGGAAACCGAAGGGGTTTTGTTTGTTTGTGTATAAGAGAATAGAGAGTGCAAAGAAGGCGTTGGAGGAACCACATAAGGCATTTGAAGGCCATGTTTTGCATTGCCAGCAAGCCATTGATGGTCCCAAGCCAGGGAAGTTACAACAGCAACAACCTCAGACTCAGATTATGCCGATGGCGGTGGGAGCAGCAGTGACGACGTCGGCAATGCAGTTTCAGAGAAATGGTAATCCTGGCTTTGTCAGTGGTGCGTTGGCAGCCACGTCAGGGCACTTGATGGCCCCGGCTGGACCTGTGATTGGATTTAATCAAGGAGCTGCTCCGGTGCCTATGCAGATGATGGATCCGGCTCTAGGGCAGGCATTGACAGCCCTGCTCACATCTCATGGCACTGCTGGCATGGGGCTGAGTGGTTTGTTGGGAACACTAGGATCATCGGCAGCAGTAAACCCCGGGGTCCCATCTGTGGGTCATGGAATGCATGTTGGTTATAATAGTCAGGCAAATCTGAATCCAGGGACTATTGGAGGATATGGGAATCAAGTTGTATTGCAGGGTGCATATCCAAACCAGCAGGTGGGACAAGGTGGCTTTGCAAGAGGACAACAACAACAGCAGCAGCGCGGTGTTGGACAATATGGTGGTGTTGCTCCTTTCATGCGGCACTAG 1494 0.512 MARKRKVPPNSTQSEQPPLKHHHHQQEQQPQLDSDEELEEEVEQLEQQQEQNDVAQYKYNNNQTFNLPSTSSTLAGDDDDPIQNLLEHFGKDQLATLLCDAAANHRDVAERIRNTANAGPSHRKIFVHGLGWDTTAETLTSAFREYGEIEDCKAVTDNITGKSKGYGFILFKTRSGARKALEQPQKKIGNRITSCQLASLGPVQQQPNNAAQASFSNSPVPSKSAAFVVPVGSDYTQRKIFVSNVGTELDPQRLLAFFSKFGEIEEGPMGLDKVTGKPKGFCLFVYKRIESAKKALEEPHKAFEGHVLHCQQAIDGPKPGKLQQQQPQTQIMPMAVGAAVTTSAMQFQRNGNPGFVSGALAATSGHLMAPAGPVIGFNQGAAPVPMQMMDPALGQALTALLTSHGTAGMGLSGLLGTLGSSAAVNPGVPSVGHGMHVGYNSQANLNPGTIGGYGNQVVLQGAYPNQQVGQGGFARGQQQQQQRGVGQYGGVAPFMRH 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1342 497 CDD RRM_RBM24_RBM38_like 238 313 - -
Lal12g1342 497 SUPERFAMILY RNA-binding domain, RBD 112 207 IPR035979 GO:0003676
Lal12g1342 497 MobiDBLite consensus disorder prediction 17 31 - -
Lal12g1342 497 Gene3D - 10 209 IPR012677 -
Lal12g1342 497 PANTHER GEO13361P1-RELATED 23 497 - -
Lal12g1342 497 MobiDBLite consensus disorder prediction 470 486 - -
Lal12g1342 497 PANTHER - 23 497 - -
Lal12g1342 497 Coils Coil 31 58 - -
Lal12g1342 497 SMART rrm1_1 124 196 IPR000504 GO:0003723
Lal12g1342 497 SMART rrm1_1 239 311 IPR000504 GO:0003723
Lal12g1342 497 MobiDBLite consensus disorder prediction 32 47 - -
Lal12g1342 497 MobiDBLite consensus disorder prediction 1 51 - -
Lal12g1342 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 191 IPR000504 GO:0003723
Lal12g1342 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 309 IPR000504 GO:0003723
Lal12g1342 497 Gene3D - 232 332 IPR012677 -
Lal12g1342 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 327 IPR000504 GO:0003723
Lal12g1342 497 SUPERFAMILY RNA-binding domain, RBD 234 327 IPR035979 GO:0003676
Lal12g1342 497 MobiDBLite consensus disorder prediction 470 490 - -
Lal12g1342 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 218 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1342 Lal-Chr12 16562184 16566641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1342 225 326 C2H2 Transcription Factor Family AT2G19380 33.333 1.13e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1342 K12741 - qsu:112025393 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1342 12 16562184 16566641 Lal12g1342 12 16562184 16566641 ECH