Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1332 ATGGGAAGCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATCAGGGGTCTCATGAAGCTTCCACCCAATCGAAGATGTATAAACTGTAATAGTATGGGACAGCAGTATGTTTGTATAACTTTTTGGACCTTCGTTTGTGTGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCTATGGCGAAGTTCACTTCACAAGAAGTTGATGCTCTTCAGAATGGTGGTAACCAGCGTGCAAGGGAAATATATTTGAATAGTTGGGACTTCCAAAGGCAGCGGTTGCCGGATAACAGGTGCACTTATGTGAGCCCTAGAATCGAAGAAGACGATACAAGGCGTGCTAGTTCTTATCATTCATATTCTCAAAGTCCTCCGTATGATAATCAATATGAGGATCGACGGTATGGAAAACAAGCATTTGCACTTACCAGGAAACTAGGTTCTGATAAAGTTCGCTATGAAGGGAAGATGTCTAGTATCATTTATAGTCCTGGTCGCTTTAGTGAACATGCATTTGATGAAAGATTTGCAAATGAGGGATCTGGTCGGAGAATTTCTGACTTTTCTGTTTCTAGTGCTGGCGACCAATTCAAATCTGATGTTCAGTCTCCTGTTTTTCATAAGGACATTGGGTTTAGCAGTCCATCTTATCAGCGTTCTGGTACGAATTCACATGAAGATGTATGGTCTCAAACAAGGAGTACTGTCCTGGAAACTAATGCCAAGAGAGATGCAGATGAAAGTCATCGTCCACAGATAACTACATCATTGCAATCAACAGACAGCAACTTTTCATCCTTAAAATCTTACACTGGTGGTGTAGTTGATTTTTTCTCTGAACCTGTCCAAGCCTCAGGATACCTTCAGAATAAAGCAGATGGTGCTCCTCATCCATCTGCTCCTACAAGATCTGTTAGTATGGATCTTTACAAGTCACCACTGGCATCTGAACTGTTTCCTTCATCAACTTCATCTGTTAATCTTTTCCCGTTATCAACAACACCATCTGCGGATTTGTTTAAATCATCTGTTTTGTCTGCAGATCCATCTTTGAATGAGAATCAACCTACGCGGACATCCCAACCCCCATCTATTGACTTTTTTGCAGATCTTGGTCAGCAACCATCTACTGAAACCTCAGCAGCAACATCTCATGTTTCGTTAGTGGATCTGTTTCAATCCTCTGTTTTGACGGATGCTCCATCTTTTAATCAGAATCAACCTAGACAAACGTTCCAACCCTCATCTATTGACTTCTTTGTAGATAATTCTCAGCAGCCATCTACTAAAAATTCAATAGCTCCATCTCAAGCACCACCTCAGGCTCCATCAGTGAATCTGTATCAATCATTTGTTTTGTCTGCAGCTCCATCTTTCAAGGAGAATCATCCTACCCAAACGTCCCAAACGCAATCTATTGACTTCTTTTCAGATCTTTCTCTGCAGCCTTTTACAGCAACCTCAGATGAGAATTCAGTGAAGTTTTCTGTCCCTAAAAATGAAGGATGGGCTGCGTTTGATATGCCTCAGAGCACATTATCTACTGCACAAGTGGGAATTCCTGTTGCAGTACCTTCTAGTGTGGGACCTTTGCAAGAAAGATTTGATCCATTTTCAAACTTCAATTCAAACATGCAATTGCCATCTGTTGAGATTTCTAGCGTTAGTGCTCCACCTTCTTCAGTTACATCCAACTTATGGCATGATGGTTTGTGGAGTGTAGAAGAACAGGCTCCTAATATTGCAACAATCACTGAACCATGGAATGCATTTGAAAGTTCTGGTACCCATCTTCCTGTGGATGCCTTTAGCGAAGGATTACAACTGCACAAATTTCCTTCAACTGATAATCAATTTTCGGTTTCAAGAGTTTCTGAGTTTGGTGATGGATCCAATAAAGGTGGTATTCAAGTGATTGCCTCTGTTGGTGGATTTGGTAATCATGACATCACATCACATACCAGTGCTTCACCAAATCTACCACCCACCCCTCCTCTAATGGGAGATATGCAATCTAATGGGATCGGTTCTAAGTCAACAAATCCATTTGATTATCCTTATGATTTTGATGTAGAACACAACAATATGTTCCTTGATATGAGCTCTTTGCAAGCCGCTCTGCCAGATTCCCCGTTGCCCGCCACCTTCGGTAGTGGTATAGCTGAACCGTGGCACCCTCAAAATACGGTGACATCATATATCTCCTCATCCGGACAAGGTGGTTTGTCATTCCTCACTGCGCAACCACTAAGTTCTCAAATTCAGAATGTTCAGACACAGGAACCAGTTGCTTCTTTTGGGGGAAATCCTTTTGCATAG 2334 0.4169 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSMGQQYVCITFWTFVCVTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLNSWDFQRQRLPDNRCTYVSPRIEEDDTRRASSYHSYSQSPPYDNQYEDRRYGKQAFALTRKLGSDKVRYEGKMSSIIYSPGRFSEHAFDERFANEGSGRRISDFSVSSAGDQFKSDVQSPVFHKDIGFSSPSYQRSGTNSHEDVWSQTRSTVLETNAKRDADESHRPQITTSLQSTDSNFSSLKSYTGGVVDFFSEPVQASGYLQNKADGAPHPSAPTRSVSMDLYKSPLASELFPSSTSSVNLFPLSTTPSADLFKSSVLSADPSLNENQPTRTSQPPSIDFFADLGQQPSTETSAATSHVSLVDLFQSSVLTDAPSFNQNQPRQTFQPSSIDFFVDNSQQPSTKNSIAPSQAPPQAPSVNLYQSFVLSAAPSFKENHPTQTSQTQSIDFFSDLSLQPFTATSDENSVKFSVPKNEGWAAFDMPQSTLSTAQVGIPVAVPSSVGPLQERFDPFSNFNSNMQLPSVEISSVSAPPSSVTSNLWHDGLWSVEEQAPNIATITEPWNAFESSGTHLPVDAFSEGLQLHKFPSTDNQFSVSRVSEFGDGSNKGGIQVIASVGGFGNHDITSHTSASPNLPPTPPLMGDMQSNGIGSKSTNPFDYPYDFDVEHNNMFLDMSSLQAALPDSPLPATFGSGIAEPWHPQNTVTSYISSSGQGGLSFLTAQPLSSQIQNVQTQEPVASFGGNPFA 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1332 777 PANTHER ARFGAP/RECO-RELATED 1 103 IPR044820 GO:0005096
Lal12g1332 777 PANTHER ARFGAP/RECO-RELATED 408 777 IPR044820 GO:0005096
Lal12g1332 777 PANTHER ARFGAP/RECO-RELATED 108 386 IPR044820 GO:0005096
Lal12g1332 777 Pfam Putative GTPase activating protein for Arf 12 101 IPR001164 GO:0005096
Lal12g1332 777 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 108 386 - -
Lal12g1332 777 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 408 777 - -
Lal12g1332 777 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 103 - -
Lal12g1332 777 CDD ArfGap_AGFG 11 103 - -
Lal12g1332 777 Gene3D Arf GTPase activating protein 2 145 IPR038508 -
Lal12g1332 777 SUPERFAMILY ArfGap/RecO-like zinc finger 10 103 IPR037278 -
Lal12g1332 777 MobiDBLite consensus disorder prediction 352 385 - -
Lal12g1332 777 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lal12g1332 777 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lal12g1332 777 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lal12g1332 777 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 155 IPR001164 GO:0005096
Lal12g1332 777 MobiDBLite consensus disorder prediction 426 446 - -
Lal12g1332 777 SMART arf_gap_3 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1332 Lal-Chr12 16356966 16366709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1332 14 118 C2H2 Transcription Factor Family AT4G05330 32.110 4.14e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1332 12 16356966 16366709 Lal12g1332 12 16356966 16366709 ECH
Lal12g1332 12 16356966 16366709 Lal13g1640 13 16178704 16187077 LSH