Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1331 ATGAGTTCATATCAGTTCAACAATGTTGCTTATGGTACCTATGCAAACCTTAGTAGAACCCCTCTTGGTTCTTCTTGTGTTTTGGTTCCACAACAACCTCTTTTAACAAACCCTTTTGAGGTTGATCTTGAGGATCATCTTGAAGCTAGGAATGGTTCTGGTTTAGGGAAAACTAAGCTTTGTGCTAGAGGACATTGGAGGCCTTCTGAGGATGCAAAACTCAAAGAGCTTGTTGCTCAATTTGGTCCTCAAAACTGGAACTCCATTGCAGAACATTTTGAAGCAAGATCAGGCAAAAGTTGCAGATTGAGATGGTTTAATCAACTAGATCCAAGAATCAACAGAAGAGCTTTCACTGAAGATGAAGAAACAAGGCTAATATCTGCTCATAGTTTATATGGTAACAAATGGGCTTTGATTTCAAGGCTTTTCCCTGGAAGAACAGATAATGCAGTTAAGAATCATTGGCATGTGATGCAAGCTAGGAGACAAAGAGAAGAATCACATCATTATAGAAGACATAACCCTAACCTTCCAAGGGTTTGGTCTTTAGGTCTATCAAACAATGGATCTAATGGATTAACCAACTCTAGTATCATCAATGATTCTTCCTCAACATGCACTAACATTTCCTTCACTCCTTCATTGAGACCAATTTTTAGGCCTTCTTATAATTATAATAACCTTGTTCCAGTTCAGAATCATGTTCATGGGTCCTTAATGGGTTTATCTAGAGAAAGGAGGGTGCAAGCTGAGAATATAGGTTTTGGAAAGGTTTTTGGTTCTTGGATTGGTCCATGTCAAATTGGATCCATGGAAAAACTCAAGGCTATGGTGGAACAAAGAAATTATTCAGATTCAAACTCAGGTGTCTCAGTATCTGAGTCAGTTTATGGTAATGAAAAAATGGATGATATGGTTCAAGTGCCATTCATTGACTTTCTTGGAGTAGGAGCTGCATAG 963 0.3832 MSSYQFNNVAYGTYANLSRTPLGSSCVLVPQQPLLTNPFEVDLEDHLEARNGSGLGKTKLCARGHWRPSEDAKLKELVAQFGPQNWNSIAEHFEARSGKSCRLRWFNQLDPRINRRAFTEDEETRLISAHSLYGNKWALISRLFPGRTDNAVKNHWHVMQARRQREESHHYRRHNPNLPRVWSLGLSNNGSNGLTNSSIINDSSSTCTNISFTPSLRPIFRPSYNYNNLVPVQNHVHGSLMGLSRERRVQAENIGFGKVFGSWIGPCQIGSMEKLKAMVEQRNYSDSNSGVSVSESVYGNEKMDDMVQVPFIDFLGVGAA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1331 320 PANTHER OS08G0435700 PROTEIN 49 319 - -
Lal12g1331 320 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
Lal12g1331 320 Gene3D - 63 114 - -
Lal12g1331 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 164 IPR017930 -
Lal12g1331 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 109 IPR017930 -
Lal12g1331 320 Coils Coil 319 320 - -
Lal12g1331 320 SMART sant 62 111 IPR001005 -
Lal12g1331 320 SMART sant 114 162 IPR001005 -
Lal12g1331 320 Pfam Myb-like DNA-binding domain 63 109 IPR001005 -
Lal12g1331 320 Pfam Myb-like DNA-binding domain 115 158 IPR001005 -
Lal12g1331 320 ProSiteProfiles Myb-like domain profile. 63 109 IPR001005 -
Lal12g1331 320 CDD SANT 117 159 IPR001005 -
Lal12g1331 320 Gene3D - 117 176 - -
Lal12g1331 320 CDD SANT 66 107 IPR001005 -
Lal12g1331 320 SUPERFAMILY Homeodomain-like 63 156 IPR009057 -
Lal12g1331 320 PANTHER MYB PROTEIN-RELATED 49 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1331 Lal-Chr12 16328864 16330709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1331 44 230 MYB Transcription Factor Family AT5G17800 56.345 8.11e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g1331 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1331 K09422 - gmx:100791795 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1331 12 16328864 16330709 Lal12g1331 12 16328864 16330709 ECH