Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1308 ATGGAGAATGATATGGAAGGTGTTTATTGGTGCAATATATGCTCTAAAATGGTGAATCCAATGAATGAAGGTGAGAATAAATGTCCAATTTGTGAGACAGAGTTTTCTGATGTAATGGAAAGCCTAAGAGGCCAGAATCATGATAGTATTGCTGATTTAAGGTCTACTTGGGTGTTCTCGCTTTACGCGCCGATCTTTCTAGGCTTGATGGGTGCTTTTATCCCTTCTCTAGCAAGCATTACTACTACTACTACTTCCCAAGGAAGTAGTAGTAGCGGCTCGAGAGGCGAGGAAGAGGTTGAACAAGAAAGGGAGAATAATGAACTTGTACTTCAGAGAAGGAGAAGAGCATCGACTTCTATGATGCAACTTTTCCGCGGTTTACATGTTAGGATGATGTCCGAATCAGATAACCCGGAAAACAATAGAAACATGAGTAACAACAACAACAACATGCTTGTTATCGATCCTTTCAACGACAGCGCCTTGATTCTACGAGGTCCTAACTTAACCTACCCGACAAGTAGCCCGAATGAGAATGTCGTCGGCTCCTTAAGCGATTTCCTTGTAGGTTCTGGCTTAGACTTGTTACTAGAGCATTTGGCACAGAATAGCCCAAGTGGATATGCAAGTGTAAACCCTCCAGCACTAAAGGCAGCAATTGAAGCAATGCCTAATGTGATCAATGAGGAAAAGTTGCAATGCACTGTTTGTTTGGAGGATCTAGAGATTGGAAAAGAAGCTAAGGAAATGCCATGTAAGCATAAATTCCATGGTGACTGCATAATCTCATGGCTGAAACTCCATAGTTCGTGCCCGATTTGCCGGTTTCGGATGCCATCGGAGGATTCGGCTGTTGAGGCCAATATGGAACTTGGAAATGAAGGCAATCAGAACAATGAGATGGTTAGAGCTAGAGAAGAGAGAGTGAGAAATAGAAGAACTTGGTTTCCAAGGTTGGAATCTTTTAACAATTTTCTTCCTTCTCCATGA 993 0.423 MENDMEGVYWCNICSKMVNPMNEGENKCPICETEFSDVMESLRGQNHDSIADLRSTWVFSLYAPIFLGLMGAFIPSLASITTTTTSQGSSSSGSRGEEEVEQERENNELVLQRRRRASTSMMQLFRGLHVRMMSESDNPENNRNMSNNNNNMLVIDPFNDSALILRGPNLTYPTSSPNENVVGSLSDFLVGSGLDLLLEHLAQNSPSGYASVNPPALKAAIEAMPNVINEEKLQCTVCLEDLEIGKEAKEMPCKHKFHGDCIISWLKLHSSCPICRFRMPSEDSAVEANMELGNEGNQNNEMVRAREERVRNRRTWFPRLESFNNFLPSP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1308 330 Pfam Ring finger domain 234 276 IPR001841 -
Lal12g1308 330 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lal12g1308 330 SMART ring_2 235 275 IPR001841 -
Lal12g1308 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 328 - -
Lal12g1308 330 MobiDBLite consensus disorder prediction 82 110 - -
Lal12g1308 330 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 328 - -
Lal12g1308 330 SUPERFAMILY RING/U-box 224 281 - -
Lal12g1308 330 MobiDBLite consensus disorder prediction 96 110 - -
Lal12g1308 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 282 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1308 Lal-Chr12 16051165 16052157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g1308 135 302 C3H Transcription Factor Family AT1G26800 32.544 1.74e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1308 K11982 - gmx:100790855 425.246